Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EBO entry

There are 7 chains in PDB entry 9EBO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 16	LEU 394
B	LEU 4	ASN 340
G	SER 8	ARG 62
N	GLN 1	VAL 126
P	HIS 7	SER 17
P	TYR 19	LYS 34
R	VAL 30	GLU 423

There are 34 helices in PDB entry 9EBO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	39	Right-handed alpha
Helix 2	AA2	A	49	51	Right-handed 310
Helix 3	AA3	A	52	61	Right-handed alpha
Helix 4	AA4	A	234	239	Right-handed 310
Helix 5	AA5	A	249	253	Right-handed 310
Helix 6	AA6	A	264	278	Right-handed alpha
Helix 7	AA7	A	279	283	Right-handed 310
Helix 8	AA8	A	293	303	Right-handed alpha
Helix 9	AA9	A	307	312	Right-handed alpha
Helix 10	AB1	A	313	316	Right-handed 310
Helix 11	AB2	A	331	350	Right-handed alpha
Helix 12	AB3	A	370	391	Right-handed alpha
Helix 13	AB4	B	5	25	Right-handed alpha
Helix 14	AB5	B	29	34	Right-handed alpha
Helix 15	AB6	G	9	24	Right-handed alpha
Helix 16	AB7	G	29	44	Right-handed alpha
Helix 17	AB8	G	45	48	Right-handed 310
Helix 18	AB9	N	28	32	Right-handed 310
Helix 19	AC1	N	87	91	Right-handed 310
Helix 20	AC2	P	8	34	Right-handed alpha
Helix 21	AC3	R	31	53	Right-handed alpha
Helix 22	AC4	R	139	169	Right-handed alpha
Helix 23	AC5	R	174	205	Right-handed alpha
Helix 24	AC6	R	206	215	Right-handed alpha
Helix 25	AC7	R	223	256	Right-handed alpha
Helix 26	AC8	R	261	292	Right-handed alpha
Helix 27	AC9	R	294	298	Right-handed 310
Helix 28	AD1	R	302	309	Right-handed 310
Helix 29	AD2	R	310	338	Right-handed alpha
Helix 30	AD3	R	345	361	Right-handed alpha
Helix 31	AD4	R	362	367	Right-handed 310
Helix 32	AD5	R	371	375	Right-handed 310
Helix 33	AD6	R	376	404	Right-handed alpha
Helix 34	AD7	R	406	423	Right-handed alpha

There are 13 sheets in PDB entry 9EBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	327	330	anti-parallel
Strand 3	B	336	339	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	21	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	18	19	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	21	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	49	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	65	66	first strand
Strand 2	R	71	72	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	79	84	first strand
Strand 2	R	99	104	anti-parallel
Strand 3	R	121	122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EBO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBO