Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EBT entry

There are 4 chains in PDB entry 9EBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 612
B
 MET 1GLU 611
C
 A 707 A 707
D
 A 709 A 709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9EBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 19Right-handed alpha
Helix 2
AA2
A
40 53Right-handed alpha
Helix 3
AA3
A
72 91Right-handed alpha
Helix 4
AA4
A
93 95Right-handed 310
Helix 5
AA5
A
105 120Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
143 153Right-handed alpha
Helix 8
AA8
A
174 178Right-handed 310
Helix 9
AA9
A
196 216Right-handed alpha
Helix 10
AB1
A
218 222Right-handed 310
Helix 11
AB2
A
224 230Right-handed 310
Helix 12
AB3
A
231 239Right-handed alpha
Helix 13
AB4
A
247 254Right-handed alpha
Helix 14
AB5
A
264 266Right-handed 310
Helix 15
AB6
A
269 279Right-handed alpha
Helix 16
AB7
A
282 286Right-handed 310
Helix 17
AB8
A
305 314Right-handed alpha
Helix 18
AB9
A
317 321Right-handed 310
Helix 19
AC1
A
324 342Right-handed alpha
Helix 20
AC2
A
352 357Right-handed 310
Helix 21
AC3
A
362 380Right-handed alpha
Helix 22
AC4
A
403 420Right-handed alpha
Helix 23
AC5
A
448 454Right-handed alpha
Helix 24
AC6
A
468 477Right-handed alpha
Helix 25
AC7
A
492 503Right-handed alpha
Helix 26
AC8
A
509 517Right-handed alpha
Helix 27
AC9
A
532 539Right-handed alpha
Helix 28
AD1
A
556 568Right-handed alpha
Helix 29
AD2
A
572 587Right-handed alpha
Helix 30
AD3
A
590 602Right-handed alpha
Helix 31
AD4
B
13 19Right-handed alpha
Helix 32
AD5
B
20 21Right-handed 310
Helix 33
AD6
B
22 26Right-handed 310
Helix 34
AD7
B
40 54Right-handed alpha
Helix 35
AD8
B
72 91Right-handed alpha
Helix 36
AD9
B
93 95Right-handed 310
Helix 37
AE1
B
105 120Right-handed alpha
Helix 38
AE2
B
143 153Right-handed alpha
Helix 39
AE3
B
196 217Right-handed alpha
Helix 40
AE4
B
218 222Right-handed 310
Helix 41
AE5
B
224 230Right-handed 310
Helix 42
AE6
B
231 239Right-handed alpha
Helix 43
AE7
B
247 254Right-handed alpha
Helix 44
AE8
B
264 266Right-handed 310
Helix 45
AE9
B
269 279Right-handed alpha
Helix 46
AF1
B
282 286Right-handed 310
Helix 47
AF2
B
305 313Right-handed alpha
Helix 48
AF3
B
317 321Right-handed 310
Helix 49
AF4
B
324 342Right-handed alpha
Helix 50
AF5
B
352 357Right-handed 310
Helix 51
AF6
B
362 380Right-handed alpha
Helix 52
AF7
B
403 420Right-handed alpha
Helix 53
AF8
B
445 447Right-handed 310
Helix 54
AF9
B
448 454Right-handed alpha
Helix 55
AG1
B
467 477Right-handed alpha
Helix 56
AG2
B
488 491Right-handed 310
Helix 57
AG3
B
492 503Right-handed alpha
Helix 58
AG4
B
509 517Right-handed alpha
Helix 59
AG5
B
532 539Right-handed alpha
Helix 60
AG6
B
549 554Right-handed alpha
Helix 61
AG7
B
556 568Right-handed alpha
Helix 62
AG8
B
572 587Right-handed alpha
Helix 63
AG9
B
590 602Right-handed alpha
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There are 4 sheets in PDB entry 9EBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
123 129anti-parallel
Strand 3
A
97 100parallel
Strand 4
A
3 7parallel
Strand 5
A
29 34parallel
Strand 6
A
58 64parallel
Strand 7
A
188 192parallel
Strand 8
A
181 185anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 262first strand
Strand 2
A
344 351parallel
Strand 3
A
388 395parallel
Strand 4
A
426 431parallel
Strand 5
A
457 461parallel
Strand 6
A
482 484parallel
Strand 7
A
505 508parallel
Strand 8
A
543 545parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 160first strand
Strand 2
B
123 129anti-parallel
Strand 3
B
97 100parallel
Strand 4
B
3 7parallel
Strand 5
B
29 35parallel
Strand 6
B
58 64parallel
Strand 7
B
188 192parallel
Strand 8
B
181 185anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 262first strand
Strand 2
B
344 351parallel
Strand 3
B
388 396parallel
Strand 4
B
426 432parallel
Strand 5
B
457 461parallel
Strand 6
B
482 484parallel
Strand 7
B
505 508parallel
Strand 8
B
543 545parallel
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