Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EBW entry

There are 8 chains in PDB entry 9EBW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	LEU 73
A	VAL 75	TYR 514
B	SER 11	LEU 73
B	VAL 75	TYR 514
C	SER 11	LEU 73
C	VAL 75	LEU 513
D	LYS 12	LEU 73
D	VAL 75	TYR 514

There are 54 helices in PDB entry 9EBW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed 310
Helix 2	AA2	A	65	70	Right-handed 310
Helix 3	AA3	A	75	79	Right-handed 310
Helix 4	AA4	A	82	86	Right-handed 310
Helix 5	AA5	A	89	94	Right-handed alpha
Helix 6	AA6	A	159	205	Right-handed alpha
Helix 7	AA7	A	211	226	Right-handed alpha
Helix 8	AA8	A	318	324	Right-handed alpha
Helix 9	AA9	A	335	337	Right-handed 310
Helix 10	AB1	A	344	348	Right-handed 310
Helix 11	AB2	A	351	356	Right-handed alpha
Helix 12	AB3	A	358	360	Right-handed 310
Helix 13	AB4	A	361	370	Right-handed alpha
Helix 14	AB5	A	417	421	Right-handed alpha
Helix 15	AB6	A	433	436	Right-handed 310
Helix 16	AB7	B	13	18	Right-handed 310
Helix 17	AB8	B	65	70	Right-handed 310
Helix 18	AB9	B	75	79	Right-handed 310
Helix 19	AC1	B	82	88	Right-handed 310
Helix 20	AC2	B	89	94	Right-handed alpha
Helix 21	AC3	B	159	204	Right-handed alpha
Helix 22	AC4	B	211	226	Right-handed alpha
Helix 23	AC5	B	264	271	Right-handed alpha
Helix 24	AC6	B	318	324	Right-handed alpha
Helix 25	AC7	B	335	337	Right-handed 310
Helix 26	AC8	B	344	348	Right-handed 310
Helix 27	AC9	B	351	356	Right-handed alpha
Helix 28	AD1	B	358	361	Right-handed 310
Helix 29	AD2	B	362	370	Right-handed alpha
Helix 30	AD3	B	417	421	Right-handed alpha
Helix 31	AD4	C	13	18	Right-handed 310
Helix 32	AD5	C	65	70	Right-handed 310
Helix 33	AD6	C	75	79	Right-handed 310
Helix 34	AD7	C	82	88	Right-handed 310
Helix 35	AD8	C	89	94	Right-handed alpha
Helix 36	AD9	C	159	204	Right-handed alpha
Helix 37	AE1	C	211	226	Right-handed alpha
Helix 38	AE2	C	318	324	Right-handed alpha
Helix 39	AE3	C	335	337	Right-handed 310
Helix 40	AE4	C	344	348	Right-handed 310
Helix 41	AE5	C	361	370	Right-handed alpha
Helix 42	AE6	C	417	421	Right-handed alpha
Helix 43	AE7	D	12	18	Right-handed 310
Helix 44	AE8	D	65	70	Right-handed alpha
Helix 45	AE9	D	82	88	Right-handed 310
Helix 46	AF1	D	89	94	Right-handed alpha
Helix 47	AF2	D	159	204	Right-handed alpha
Helix 48	AF3	D	211	226	Right-handed alpha
Helix 49	AF4	D	318	324	Right-handed alpha
Helix 50	AF5	D	335	337	Right-handed 310
Helix 51	AF6	D	344	348	Right-handed 310
Helix 52	AF7	D	351	356	Right-handed alpha
Helix 53	AF8	D	361	370	Right-handed alpha
Helix 54	AF9	D	417	421	Right-handed alpha

There are 15 sheets in PDB entry 9EBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	31	first strand
Strand 2	A	34	45	anti-parallel
Strand 3	A	50	57	anti-parallel
Strand 4	A	494	504	anti-parallel
Strand 5	A	476	485	anti-parallel
Strand 6	A	425	432	anti-parallel
Strand 7	A	437	447	anti-parallel
Strand 8	A	453	464	anti-parallel
Strand 9	A	99	107	anti-parallel
Strand 10	A	112	122	anti-parallel
Strand 11	A	125	135	anti-parallel
Strand 12	A	21	31	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	242	249	anti-parallel
Strand 3	A	229	236	anti-parallel
Strand 4	A	307	314	anti-parallel
Strand 5	A	287	297	anti-parallel
Strand 6	A	275	276	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	242	249	anti-parallel
Strand 3	A	229	236	anti-parallel
Strand 4	A	307	314	anti-parallel
Strand 5	A	287	297	anti-parallel
Strand 6	A	280	284	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	330	333	anti-parallel
Strand 3	A	408	416	anti-parallel
Strand 4	A	385	395	anti-parallel
Strand 5	A	374	380	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	31	first strand
Strand 2	B	34	45	anti-parallel
Strand 3	B	50	57	anti-parallel
Strand 4	B	494	504	anti-parallel
Strand 5	B	476	485	anti-parallel
Strand 6	B	425	432	anti-parallel
Strand 7	B	437	447	anti-parallel
Strand 8	B	453	464	anti-parallel
Strand 9	B	99	107	anti-parallel
Strand 10	B	112	122	anti-parallel
Strand 11	B	125	135	anti-parallel
Strand 12	B	21	31	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	242	249	anti-parallel
Strand 3	B	229	236	anti-parallel
Strand 4	B	307	314	anti-parallel
Strand 5	B	287	297	anti-parallel
Strand 6	B	275	276	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	242	249	anti-parallel
Strand 3	B	229	236	anti-parallel
Strand 4	B	307	314	anti-parallel
Strand 5	B	287	297	anti-parallel
Strand 6	B	280	284	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	330	333	anti-parallel
Strand 3	B	408	416	anti-parallel
Strand 4	B	385	395	anti-parallel
Strand 5	B	374	380	anti-parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	31	first strand
Strand 2	C	34	45	anti-parallel
Strand 3	C	50	57	anti-parallel
Strand 4	C	494	504	anti-parallel
Strand 5	C	476	485	anti-parallel
Strand 6	C	425	432	anti-parallel
Strand 7	C	437	447	anti-parallel
Strand 8	C	453	464	anti-parallel
Strand 9	C	99	107	anti-parallel
Strand 10	C	112	122	anti-parallel
Strand 11	C	125	135	anti-parallel
Strand 12	C	21	31	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	242	249	anti-parallel
Strand 3	C	229	236	anti-parallel
Strand 4	C	307	314	anti-parallel
Strand 5	C	287	298	anti-parallel
Strand 6	C	275	276	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	242	249	anti-parallel
Strand 3	C	229	236	anti-parallel
Strand 4	C	307	314	anti-parallel
Strand 5	C	287	298	anti-parallel
Strand 6	C	280	284	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	330	333	anti-parallel
Strand 3	C	408	416	anti-parallel
Strand 4	C	386	395	anti-parallel
Strand 5	C	374	379	anti-parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	31	first strand
Strand 2	D	34	45	anti-parallel
Strand 3	D	50	57	anti-parallel
Strand 4	D	494	504	anti-parallel
Strand 5	D	476	485	anti-parallel
Strand 6	D	425	432	anti-parallel
Strand 7	D	437	447	anti-parallel
Strand 8	D	453	464	anti-parallel
Strand 9	D	99	107	anti-parallel
Strand 10	D	112	122	anti-parallel
Strand 11	D	125	135	anti-parallel
Strand 12	D	21	31	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	247	first strand
Strand 2	D	231	234	anti-parallel
Strand 3	D	309	314	anti-parallel
Strand 4	D	287	294	anti-parallel
Strand 5	D	280	284	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	330	333	anti-parallel
Strand 3	D	408	416	anti-parallel
Strand 4	D	387	395	anti-parallel
Strand 5	D	374	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EBW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBW