Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EBX entry

There are 2 chains in PDB entry 9EBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 12LEU 73
A
 VAL 75GLY 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9EBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 70Right-handed 310
Helix 2
AA2
A
90 94Right-handed alpha
Helix 3
AA3
A
166 204Right-handed alpha
Helix 4
AA4
A
211 226Right-handed alpha
Helix 5
AA5
A
263 271Right-handed alpha
Helix 6
AA6
A
318 323Right-handed alpha
Helix 7
AA7
A
335 337Right-handed 310
Helix 8
AA8
A
344 348Right-handed 310
Helix 9
AA9
A
351 356Right-handed alpha
Helix 10
AB1
A
358 361Right-handed 310
Helix 11
AB2
A
362 371Right-handed alpha
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There are 4 sheets in PDB entry 9EBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 504first strand
Strand 2
A
475 485anti-parallel
Strand 3
A
494 500anti-parallel
Strand 4
A
50 57anti-parallel
Strand 5
A
34 45anti-parallel
Strand 6
A
20 31anti-parallel
Strand 7
A
125 135parallel
Strand 8
A
112 122anti-parallel
Strand 9
A
98 107anti-parallel
Strand 10
A
453 464anti-parallel
Strand 11
A
438 447anti-parallel
Strand 12
A
423 431anti-parallel
Strand 13
A
475 485anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
229 236anti-parallel
Strand 4
A
307 314anti-parallel
Strand 5
A
287 298anti-parallel
Strand 6
A
275 276anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
229 236anti-parallel
Strand 4
A
307 314anti-parallel
Strand 5
A
287 298anti-parallel
Strand 6
A
280 284anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
330 333anti-parallel
Strand 3
A
408 417anti-parallel
Strand 4
A
386 395anti-parallel
Strand 5
A
374 379anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il