Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EBY entry

There are 2 chains in PDB entry 9EBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10GLY 394
B
 MET 1HIS 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9EBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 24Right-handed alpha
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
51 61Right-handed alpha
Helix 4
AA4
A
68 73Right-handed 310
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
91 104Right-handed alpha
Helix 7
AA7
A
106 127Right-handed alpha
Helix 8
AA8
A
133 137Right-handed alpha
Helix 9
AA9
A
137 151Right-handed alpha
Helix 10
AB1
A
158 172Right-handed alpha
Helix 11
AB2
A
177 179Right-handed 310
Helix 12
AB3
A
180 201Right-handed alpha
Helix 13
AB4
A
206 215Right-handed alpha
Helix 14
AB5
A
223 255Right-handed alpha
Helix 15
AB6
A
257 265Right-handed alpha
Helix 16
AB7
A
268 281Right-handed alpha
Helix 17
AB8
A
310 315Right-handed alpha
Helix 18
AB9
A
341 345Right-handed 310
Helix 19
AC1
A
348 364Right-handed alpha
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There are 4 sheets in PDB entry 9EBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
306 309parallel
Strand 4
A
286 290anti-parallel
Strand 5
A
65 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
390 392anti-parallel
Strand 3
A
370 371anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
386 388anti-parallel
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