Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EBZ entry

There are 4 chains in PDB entry 9EBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 214
B
 LYS 2LEU 214
C
 MET 1LYS 213
D
 LYS 2LEU 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9EBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 22Right-handed alpha
Helix 2
AA2
A
24 31Right-handed alpha
Helix 3
AA3
A
48 54Right-handed alpha
Helix 4
AA4
A
74 87Right-handed alpha
Helix 5
AA5
A
101 110Right-handed alpha
Helix 6
AA6
A
115 130Right-handed alpha
Helix 7
AA7
A
130 137Right-handed alpha
Helix 8
AA8
A
138 140Right-handed 310
Helix 9
AA9
A
141 161Right-handed alpha
Helix 10
AB1
A
161 170Right-handed alpha
Helix 11
AB2
A
197 213Right-handed alpha
Helix 12
AB3
B
3 22Right-handed alpha
Helix 13
AB4
B
24 31Right-handed alpha
Helix 14
AB5
B
48 54Right-handed alpha
Helix 15
AB6
B
74 87Right-handed alpha
Helix 16
AB7
B
101 110Right-handed alpha
Helix 17
AB8
B
115 130Right-handed alpha
Helix 18
AB9
B
130 136Right-handed alpha
Helix 19
AC1
B
137 140Right-handed 310
Helix 20
AC2
B
141 161Right-handed alpha
Helix 21
AC3
B
161 170Right-handed alpha
Helix 22
AC4
B
197 213Right-handed alpha
Helix 23
AC5
C
3 22Right-handed alpha
Helix 24
AC6
C
24 32Right-handed alpha
Helix 25
AC7
C
48 54Right-handed alpha
Helix 26
AC8
C
74 87Right-handed alpha
Helix 27
AC9
C
101 110Right-handed alpha
Helix 28
AD1
C
115 130Right-handed alpha
Helix 29
AD2
C
130 137Right-handed alpha
Helix 30
AD3
C
138 141Right-handed 310
Helix 31
AD4
C
142 161Right-handed alpha
Helix 32
AD5
C
161 170Right-handed alpha
Helix 33
AD6
C
197 213Right-handed alpha
Helix 34
AD7
D
3 22Right-handed alpha
Helix 35
AD8
D
24 31Right-handed alpha
Helix 36
AD9
D
48 54Right-handed alpha
Helix 37
AE1
D
74 87Right-handed alpha
Helix 38
AE2
D
101 110Right-handed alpha
Helix 39
AE3
D
115 130Right-handed alpha
Helix 40
AE4
D
130 137Right-handed alpha
Helix 41
AE5
D
138 140Right-handed 310
Helix 42
AE6
D
141 161Right-handed alpha
Helix 43
AE7
D
161 170Right-handed alpha
Helix 44
AE8
D
197 213Right-handed alpha
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There are 4 sheets in PDB entry 9EBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
37 42parallel
Strand 3
A
92 98parallel
Strand 4
A
175 181parallel
Strand 5
A
188 190anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
37 42parallel
Strand 3
B
92 98parallel
Strand 4
B
175 181parallel
Strand 5
B
189 190anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 65first strand
Strand 2
C
37 42parallel
Strand 3
C
92 98parallel
Strand 4
C
175 181parallel
Strand 5
C
188 190anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 65first strand
Strand 2
D
37 42parallel
Strand 3
D
92 98parallel
Strand 4
D
175 181parallel
Strand 5
D
188 190anti-parallel
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