Analysis of interatomic Contacts of Structural Units in PDB entry:
9ED6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ED6 entry

There are 8 chains in PDB entry 9ED6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 5	ARG 302
E	MET 1	ALA 124
F	ASP 3	GLU 122
H	MET 1	MET 89
I	VAL 8	VAL 324
C	SER 59	VAL 371
D	ARG 47	PRO 161
G	LEU 5	ARG 92

There are 44 helices in PDB entry 9ED6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	19	28	Right-handed alpha
Helix 2	AA2	B	32	37	Right-handed 310
Helix 3	AA3	B	65	70	Right-handed alpha
Helix 4	AA4	B	77	83	Right-handed alpha
Helix 5	AA5	B	98	117	Right-handed alpha
Helix 6	AA6	B	129	133	Right-handed 310
Helix 7	AA7	B	136	152	Right-handed alpha
Helix 8	AA8	B	167	179	Right-handed alpha
Helix 9	AA9	B	183	199	Right-handed alpha
Helix 10	AB1	B	226	243	Right-handed alpha
Helix 11	AB2	B	282	293	Right-handed alpha
Helix 12	AB3	B	293	302	Right-handed alpha
Helix 13	AB4	E	3	13	Right-handed alpha
Helix 14	AB5	E	41	46	Right-handed alpha
Helix 15	AB6	E	47	64	Right-handed alpha
Helix 16	AB7	E	100	110	Right-handed alpha
Helix 17	AB8	E	111	124	Right-handed alpha
Helix 18	AB9	F	7	12	Right-handed alpha
Helix 19	AC1	F	13	16	Right-handed 310
Helix 20	AC2	F	41	46	Right-handed alpha
Helix 21	AC3	F	46	61	Right-handed alpha
Helix 22	AC4	F	99	110	Right-handed alpha
Helix 23	AC5	F	110	117	Right-handed alpha
Helix 24	AC6	H	2	14	Right-handed alpha
Helix 25	AC7	H	38	41	Right-handed 310
Helix 26	AC8	H	42	53	Right-handed alpha
Helix 27	AC9	H	58	62	Right-handed 310
Helix 28	AD1	C	73	82	Right-handed alpha
Helix 29	AD2	C	131	137	Right-handed alpha
Helix 30	AD3	C	150	168	Right-handed alpha
Helix 31	AD4	C	184	205	Right-handed alpha
Helix 32	AD5	C	223	235	Right-handed alpha
Helix 33	AD6	C	239	255	Right-handed alpha
Helix 34	AD7	C	278	300	Right-handed alpha
Helix 35	AD8	C	344	347	Right-handed 310
Helix 36	AD9	C	348	367	Right-handed alpha
Helix 37	AE1	D	48	65	Right-handed alpha
Helix 38	AE2	D	78	95	Right-handed alpha
Helix 39	AE3	D	115	121	Right-handed alpha
Helix 40	AE4	D	125	143	Right-handed alpha
Helix 41	AE5	G	6	10	Right-handed 310
Helix 42	AE6	G	21	25	Right-handed 310
Helix 43	AE7	G	36	49	Right-handed alpha
Helix 44	AE8	G	50	52	Right-handed 310

There are 13 sheets in PDB entry 9ED6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	56	62	anti-parallel
Strand 3	B	6	14	parallel
Strand 4	B	87	93	parallel
Strand 5	B	121	127	parallel
Strand 6	B	157	161	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	218	first strand
Strand 2	B	202	206	anti-parallel
Strand 3	B	271	276	anti-parallel
Strand 4	B	260	262	anti-parallel
Strand 5	B	249	255	anti-parallel
Strand 6	C	315	320	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	26	first strand
Strand 2	E	89	95	anti-parallel
Strand 3	E	80	86	anti-parallel
Strand 4	E	69	75	anti-parallel
Strand 5	F	70	75	anti-parallel
Strand 6	F	78	84	anti-parallel
Strand 7	F	88	95	anti-parallel
Strand 8	F	19	26	anti-parallel
Strand 9	F	35	36	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	82	88	anti-parallel
Strand 4	H	72	78	anti-parallel
Strand 5	H	64	69	anti-parallel
Strand 6	G	65	70	anti-parallel
Strand 7	G	73	80	anti-parallel
Strand 8	G	83	89	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	39	first strand
Strand 2	I	23	27	anti-parallel
Strand 3	I	14	18	anti-parallel
Strand 4	I	319	321	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	50	first strand
Strand 2	I	56	61	anti-parallel
Strand 3	I	64	69	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	88	93	first strand
Strand 2	I	99	104	anti-parallel
Strand 3	I	108	113	anti-parallel
Strand 4	I	124	126	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	131	136	first strand
Strand 2	I	142	147	anti-parallel
Strand 3	I	152	156	anti-parallel
Strand 4	I	163	165	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	173	178	first strand
Strand 2	I	184	189	anti-parallel
Strand 3	I	194	199	anti-parallel
Strand 4	I	210	216	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	223	228	first strand
Strand 2	I	234	239	anti-parallel
Strand 3	I	243	248	anti-parallel
Strand 4	I	254	259	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	273	278	first strand
Strand 2	I	284	289	anti-parallel
Strand 3	I	294	298	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	63	67	parallel
Strand 3	C	139	145	parallel
Strand 4	C	172	178	parallel
Strand 5	C	213	217	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	272	first strand
Strand 2	C	258	263	anti-parallel
Strand 3	C	336	342	anti-parallel
Strand 4	C	324	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ED6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ED6