Analysis of interatomic Contacts of Structural Units in PDB entry:
9ED7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ED7 entry

There are 3 chains in PDB entry 9ED7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 15	TRP 2549
B	VAL 8	VAL 324
L	SER 4	ALA 173

There are144 helices in PDB entry 9ED7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	30	Right-handed alpha
Helix 2	AA2	A	33	51	Right-handed alpha
Helix 3	AA3	A	56	77	Right-handed alpha
Helix 4	AA4	A	79	94	Right-handed alpha
Helix 5	AA5	A	100	115	Right-handed alpha
Helix 6	AA6	A	119	136	Right-handed alpha
Helix 7	AA7	A	140	157	Right-handed alpha
Helix 8	AA8	A	161	179	Right-handed alpha
Helix 9	AA9	A	179	185	Right-handed alpha
Helix 10	AB1	A	186	199	Right-handed alpha
Helix 11	AB2	A	202	223	Right-handed alpha
Helix 12	AB3	A	232	246	Right-handed alpha
Helix 13	AB4	A	247	252	Right-handed 310
Helix 14	AB5	A	256	276	Right-handed alpha
Helix 15	AB6	A	276	304	Right-handed alpha
Helix 16	AB7	A	359	369	Right-handed alpha
Helix 17	AB8	A	369	381	Right-handed alpha
Helix 18	AB9	A	385	403	Right-handed alpha
Helix 19	AC1	A	403	411	Right-handed alpha
Helix 20	AC2	A	412	424	Right-handed alpha
Helix 21	AC3	A	429	444	Right-handed alpha
Helix 22	AC4	A	451	463	Right-handed alpha
Helix 23	AC5	A	479	494	Right-handed alpha
Helix 24	AC6	A	497	512	Right-handed alpha
Helix 25	AC7	A	514	528	Right-handed alpha
Helix 26	AC8	A	531	547	Right-handed alpha
Helix 27	AC9	A	578	592	Right-handed alpha
Helix 28	AD1	A	598	609	Right-handed alpha
Helix 29	AD2	A	615	630	Right-handed alpha
Helix 30	AD3	A	630	639	Right-handed alpha
Helix 31	AD4	A	640	644	Right-handed 310
Helix 32	AD5	A	645	666	Right-handed alpha
Helix 33	AD6	A	668	679	Right-handed alpha
Helix 34	AD7	A	680	682	Right-handed 310
Helix 35	AD8	A	683	688	Right-handed alpha
Helix 36	AD9	A	689	700	Right-handed alpha
Helix 37	AE1	A	704	720	Right-handed alpha
Helix 38	AE2	A	722	744	Right-handed alpha
Helix 39	AE3	A	746	764	Right-handed alpha
Helix 40	AE4	A	764	769	Right-handed alpha
Helix 41	AE5	A	771	784	Right-handed alpha
Helix 42	AE6	A	792	809	Right-handed alpha
Helix 43	AE7	A	813	815	Right-handed 310
Helix 44	AE8	A	816	830	Right-handed alpha
Helix 45	AE9	A	836	852	Right-handed alpha
Helix 46	AF1	A	855	861	Right-handed alpha
Helix 47	AF2	A	862	875	Right-handed alpha
Helix 48	AF3	A	877	892	Right-handed alpha
Helix 49	AF4	A	895	903	Right-handed alpha
Helix 50	AF5	A	907	912	Right-handed alpha
Helix 51	AF6	A	930	939	Right-handed alpha
Helix 52	AF7	A	942	961	Right-handed alpha
Helix 53	AF8	A	962	966	Right-handed 310
Helix 54	AF9	A	967	983	Right-handed alpha
Helix 55	AG1	A	984	988	Right-handed 310
Helix 56	AG2	A	989	1004	Right-handed alpha
Helix 57	AG3	A	1005	1024	Right-handed alpha
Helix 58	AG4	A	1025	1029	Right-handed 310
Helix 59	AG5	A	1030	1040	Right-handed alpha
Helix 60	AG6	A	1045	1063	Right-handed alpha
Helix 61	AG7	A	1065	1073	Right-handed 310
Helix 62	AG8	A	1074	1084	Right-handed alpha
Helix 63	AG9	A	1087	1089	Right-handed 310
Helix 64	AH1	A	1090	1101	Right-handed alpha
Helix 65	AH2	A	1102	1108	Right-handed 310
Helix 66	AH3	A	1110	1124	Right-handed alpha
Helix 67	AH4	A	1128	1144	Right-handed alpha
Helix 68	AH5	A	1150	1154	Right-handed 310
Helix 69	AH6	A	1155	1166	Right-handed alpha
Helix 70	AH7	A	1169	1185	Right-handed alpha
Helix 71	AH8	A	1185	1190	Right-handed alpha
Helix 72	AH9	A	1191	1203	Right-handed alpha
Helix 73	AI1	A	1206	1212	Right-handed alpha
Helix 74	AI2	A	1261	1269	Right-handed alpha
Helix 75	AI3	A	1270	1274	Right-handed 310
Helix 76	AI4	A	1276	1294	Right-handed alpha
Helix 77	AI5	A	1297	1303	Right-handed alpha
Helix 78	AI6	A	1303	1310	Right-handed alpha
Helix 79	AI7	A	1310	1317	Right-handed alpha
Helix 80	AI8	A	1317	1327	Right-handed alpha
Helix 81	AI9	A	1330	1348	Right-handed alpha
Helix 82	AJ1	A	1350	1367	Right-handed alpha
Helix 83	AJ2	A	1379	1390	Right-handed alpha
Helix 84	AJ3	A	1392	1407	Right-handed alpha
Helix 85	AJ4	A	1409	1423	Right-handed alpha
Helix 86	AJ5	A	1425	1440	Right-handed alpha
Helix 87	AJ6	A	1446	1453	Right-handed alpha
Helix 88	AJ7	A	1455	1468	Right-handed alpha
Helix 89	AJ8	A	1473	1488	Right-handed alpha
Helix 90	AJ9	A	1489	1501	Right-handed alpha
Helix 91	AK1	A	1505	1524	Right-handed alpha
Helix 92	AK2	A	1525	1534	Right-handed alpha
Helix 93	AK3	A	1540	1554	Right-handed alpha
Helix 94	AK4	A	1556	1580	Right-handed alpha
Helix 95	AK5	A	1582	1608	Right-handed alpha
Helix 96	AK6	A	1611	1626	Right-handed alpha
Helix 97	AK7	A	1629	1641	Right-handed alpha
Helix 98	AK8	A	1645	1648	Right-handed 310
Helix 99	AK9	A	1649	1662	Right-handed alpha
Helix 100	AL1	A	1665	1678	Right-handed alpha
Helix 101	AL2	A	1680	1684	Right-handed 310
Helix 102	AL3	A	1693	1707	Right-handed alpha
Helix 103	AL4	A	1709	1731	Right-handed alpha
Helix 104	AL5	A	1736	1763	Right-handed alpha
Helix 105	AL6	A	1767	1783	Right-handed alpha
Helix 106	AL7	A	1786	1813	Right-handed alpha
Helix 107	AL8	A	1870	1896	Right-handed alpha
Helix 108	AL9	A	1899	1914	Right-handed alpha
Helix 109	AM1	A	1916	1930	Right-handed alpha
Helix 110	AM2	A	1931	1937	Right-handed 310
Helix 111	AM3	A	1938	1945	Right-handed alpha
Helix 112	AM4	A	1950	1968	Right-handed alpha
Helix 113	AM5	A	1968	1981	Right-handed alpha
Helix 114	AM6	A	1984	2021	Right-handed alpha
Helix 115	AM7	A	2022	2040	Right-handed alpha
Helix 116	AM8	A	2043	2061	Right-handed alpha
Helix 117	AM9	A	2064	2092	Right-handed alpha
Helix 118	AN1	A	2093	2115	Right-handed alpha
Helix 119	AN2	A	2116	2118	Right-handed 310
Helix 120	AN3	A	2123	2127	Right-handed alpha
Helix 121	AN4	A	2127	2133	Right-handed alpha
Helix 122	AN5	A	2191	2212	Right-handed alpha
Helix 123	AN6	A	2212	2218	Right-handed alpha
Helix 124	AN7	A	2246	2257	Right-handed alpha
Helix 125	AN8	A	2262	2272	Right-handed alpha
Helix 126	AN9	A	2274	2278	Right-handed 310
Helix 127	AO1	A	2279	2293	Right-handed alpha
Helix 128	AO2	A	2297	2306	Right-handed alpha
Helix 129	AO3	A	2309	2335	Right-handed alpha
Helix 130	AO4	A	2340	2342	Right-handed 310
Helix 131	AO5	A	2380	2387	Right-handed alpha
Helix 132	AO6	A	2394	2410	Right-handed alpha
Helix 133	AO7	A	2410	2423	Right-handed alpha
Helix 134	AO8	A	2424	2429	Right-handed 310
Helix 135	AO9	A	2491	2510	Right-handed alpha
Helix 136	AP1	A	2520	2534	Right-handed alpha
Helix 137	AP2	A	2534	2540	Right-handed alpha
Helix 138	AP3	A	2542	2546	Right-handed 310
Helix 139	AP4	B	264	268	Right-handed 310
Helix 140	AP5	L	18	29	Right-handed alpha
Helix 141	AP6	L	71	76	Right-handed 310
Helix 142	AP7	L	89	107	Right-handed alpha
Helix 143	AP8	L	130	141	Right-handed alpha
Helix 144	AP9	L	152	173	Right-handed alpha

There are 10 sheets in PDB entry 9ED7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2159	2162	anti-parallel
Strand 3	A	2170	2176	anti-parallel
Strand 4	A	2153	2156	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2159	2162	anti-parallel
Strand 3	A	2170	2176	anti-parallel
Strand 4	A	2181	2187	anti-parallel
Strand 5	A	2235	2238	anti-parallel
Strand 6	A	2227	2229	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2243	2245	first strand
Strand 2	A	2344	2347	anti-parallel
Strand 3	A	2353	2355	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	23	27	anti-parallel
Strand 3	B	14	19	anti-parallel
Strand 4	B	315	321	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	50	first strand
Strand 2	B	56	69	anti-parallel
Strand 3	B	79	93	anti-parallel
Strand 4	B	99	104	anti-parallel
Strand 5	B	108	113	anti-parallel
Strand 6	B	123	126	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	136	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	B	152	156	anti-parallel
Strand 4	B	162	165	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	178	first strand
Strand 2	B	184	189	anti-parallel
Strand 3	B	194	198	anti-parallel
Strand 4	B	211	212	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	228	first strand
Strand 2	B	234	239	anti-parallel
Strand 3	B	243	248	anti-parallel
Strand 4	B	257	259	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	49	first strand
Strand 2	L	52	61	anti-parallel
Strand 3	L	5	13	parallel
Strand 4	L	81	86	parallel
Strand 5	L	114	119	parallel
Strand 6	L	144	148	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ED7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ED7