Analysis of interatomic Contacts of Structural Units in PDB entry:
9ED8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ED8 entry

There are 3 chains in PDB entry 9ED8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 15	TRP 2549
B	VAL 8	VAL 324
L	SER 4	ALA 173

There are130 helices in PDB entry 9ED8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	31	Right-handed alpha
Helix 2	AA2	A	33	51	Right-handed alpha
Helix 3	AA3	A	56	76	Right-handed alpha
Helix 4	AA4	A	79	94	Right-handed alpha
Helix 5	AA5	A	100	113	Right-handed alpha
Helix 6	AA6	A	119	135	Right-handed alpha
Helix 7	AA7	A	136	137	Right-handed 310
Helix 8	AA8	A	138	139	Right-handed 310
Helix 9	AA9	A	140	158	Right-handed alpha
Helix 10	AB1	A	161	179	Right-handed alpha
Helix 11	AB2	A	179	199	Right-handed alpha
Helix 12	AB3	A	202	224	Right-handed alpha
Helix 13	AB4	A	232	246	Right-handed alpha
Helix 14	AB5	A	248	252	Right-handed 310
Helix 15	AB6	A	256	276	Right-handed alpha
Helix 16	AB7	A	276	292	Right-handed alpha
Helix 17	AB8	A	359	382	Right-handed alpha
Helix 18	AB9	A	385	403	Right-handed alpha
Helix 19	AC1	A	403	411	Right-handed alpha
Helix 20	AC2	A	411	424	Right-handed alpha
Helix 21	AC3	A	426	444	Right-handed alpha
Helix 22	AC4	A	446	450	Right-handed 310
Helix 23	AC5	A	451	463	Right-handed alpha
Helix 24	AC6	A	479	512	Right-handed alpha
Helix 25	AC7	A	514	528	Right-handed alpha
Helix 26	AC8	A	528	547	Right-handed alpha
Helix 27	AC9	A	578	592	Right-handed alpha
Helix 28	AD1	A	597	610	Right-handed alpha
Helix 29	AD2	A	615	630	Right-handed alpha
Helix 30	AD3	A	630	639	Right-handed alpha
Helix 31	AD4	A	640	644	Right-handed 310
Helix 32	AD5	A	645	666	Right-handed alpha
Helix 33	AD6	A	668	678	Right-handed alpha
Helix 34	AD7	A	680	688	Right-handed alpha
Helix 35	AD8	A	689	701	Right-handed alpha
Helix 36	AD9	A	704	719	Right-handed alpha
Helix 37	AE1	A	722	744	Right-handed alpha
Helix 38	AE2	A	746	764	Right-handed alpha
Helix 39	AE3	A	764	769	Right-handed alpha
Helix 40	AE4	A	771	785	Right-handed alpha
Helix 41	AE5	A	792	814	Right-handed alpha
Helix 42	AE6	A	816	830	Right-handed alpha
Helix 43	AE7	A	836	852	Right-handed alpha
Helix 44	AE8	A	855	861	Right-handed alpha
Helix 45	AE9	A	862	875	Right-handed alpha
Helix 46	AF1	A	877	892	Right-handed alpha
Helix 47	AF2	A	895	904	Right-handed alpha
Helix 48	AF3	A	932	941	Right-handed alpha
Helix 49	AF4	A	942	961	Right-handed alpha
Helix 50	AF5	A	964	982	Right-handed alpha
Helix 51	AF6	A	985	988	Right-handed 310
Helix 52	AF7	A	989	1004	Right-handed alpha
Helix 53	AF8	A	1005	1024	Right-handed alpha
Helix 54	AF9	A	1027	1042	Right-handed alpha
Helix 55	AG1	A	1045	1063	Right-handed alpha
Helix 56	AG2	A	1070	1085	Right-handed alpha
Helix 57	AG3	A	1088	1101	Right-handed alpha
Helix 58	AG4	A	1103	1108	Right-handed alpha
Helix 59	AG5	A	1110	1124	Right-handed alpha
Helix 60	AG6	A	1128	1143	Right-handed alpha
Helix 61	AG7	A	1152	1164	Right-handed alpha
Helix 62	AG8	A	1166	1191	Right-handed alpha
Helix 63	AG9	A	1191	1203	Right-handed alpha
Helix 64	AH1	A	1206	1214	Right-handed alpha
Helix 65	AH2	A	1261	1269	Right-handed alpha
Helix 66	AH3	A	1276	1295	Right-handed alpha
Helix 67	AH4	A	1297	1310	Right-handed alpha
Helix 68	AH5	A	1310	1317	Right-handed alpha
Helix 69	AH6	A	1317	1328	Right-handed alpha
Helix 70	AH7	A	1330	1348	Right-handed alpha
Helix 71	AH8	A	1350	1367	Right-handed alpha
Helix 72	AH9	A	1379	1390	Right-handed alpha
Helix 73	AI1	A	1392	1407	Right-handed alpha
Helix 74	AI2	A	1409	1423	Right-handed alpha
Helix 75	AI3	A	1425	1441	Right-handed alpha
Helix 76	AI4	A	1446	1454	Right-handed alpha
Helix 77	AI5	A	1455	1470	Right-handed alpha
Helix 78	AI6	A	1473	1488	Right-handed alpha
Helix 79	AI7	A	1489	1504	Right-handed alpha
Helix 80	AI8	A	1505	1524	Right-handed alpha
Helix 81	AI9	A	1525	1536	Right-handed alpha
Helix 82	AJ1	A	1540	1554	Right-handed alpha
Helix 83	AJ2	A	1556	1579	Right-handed alpha
Helix 84	AJ3	A	1582	1608	Right-handed alpha
Helix 85	AJ4	A	1611	1625	Right-handed alpha
Helix 86	AJ5	A	1629	1641	Right-handed alpha
Helix 87	AJ6	A	1645	1648	Right-handed 310
Helix 88	AJ7	A	1649	1663	Right-handed alpha
Helix 89	AJ8	A	1665	1678	Right-handed alpha
Helix 90	AJ9	A	1680	1685	Right-handed 310
Helix 91	AK1	A	1693	1707	Right-handed alpha
Helix 92	AK2	A	1709	1731	Right-handed alpha
Helix 93	AK3	A	1733	1763	Right-handed alpha
Helix 94	AK4	A	1767	1783	Right-handed alpha
Helix 95	AK5	A	1786	1813	Right-handed alpha
Helix 96	AK6	A	1870	1896	Right-handed alpha
Helix 97	AK7	A	1899	1914	Right-handed alpha
Helix 98	AK8	A	1916	1930	Right-handed alpha
Helix 99	AK9	A	1931	1937	Right-handed 310
Helix 100	AL1	A	1938	1945	Right-handed alpha
Helix 101	AL2	A	1950	1968	Right-handed alpha
Helix 102	AL3	A	1968	1982	Right-handed alpha
Helix 103	AL4	A	1984	2021	Right-handed alpha
Helix 104	AL5	A	2022	2040	Right-handed alpha
Helix 105	AL6	A	2043	2060	Right-handed alpha
Helix 106	AL7	A	2064	2092	Right-handed alpha
Helix 107	AL8	A	2093	2115	Right-handed alpha
Helix 108	AL9	A	2116	2118	Right-handed 310
Helix 109	AM1	A	2123	2127	Right-handed alpha
Helix 110	AM2	A	2127	2133	Right-handed alpha
Helix 111	AM3	A	2191	2212	Right-handed alpha
Helix 112	AM4	A	2212	2219	Right-handed alpha
Helix 113	AM5	A	2246	2258	Right-handed alpha
Helix 114	AM6	A	2262	2272	Right-handed alpha
Helix 115	AM7	A	2274	2278	Right-handed 310
Helix 116	AM8	A	2279	2294	Right-handed alpha
Helix 117	AM9	A	2297	2307	Right-handed alpha
Helix 118	AN1	A	2309	2335	Right-handed alpha
Helix 119	AN2	A	2363	2367	Right-handed 310
Helix 120	AN3	A	2380	2386	Right-handed alpha
Helix 121	AN4	A	2394	2410	Right-handed alpha
Helix 122	AN5	A	2410	2423	Right-handed alpha
Helix 123	AN6	A	2491	2510	Right-handed alpha
Helix 124	AN7	A	2520	2534	Right-handed alpha
Helix 125	AN8	A	2534	2540	Right-handed alpha
Helix 126	AN9	A	2542	2546	Right-handed 310
Helix 127	AO1	L	17	28	Right-handed alpha
Helix 128	AO2	L	89	107	Right-handed alpha
Helix 129	AO3	L	130	142	Right-handed alpha
Helix 130	AO4	L	152	173	Right-handed alpha

There are 10 sheets in PDB entry 9ED8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2159	2162	anti-parallel
Strand 3	A	2170	2175	anti-parallel
Strand 4	A	2181	2188	anti-parallel
Strand 5	A	2234	2238	anti-parallel
Strand 6	A	2227	2229	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2243	2245	first strand
Strand 2	A	2344	2347	anti-parallel
Strand 3	A	2353	2355	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	23	27	anti-parallel
Strand 3	B	14	19	anti-parallel
Strand 4	B	315	321	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	56	60	anti-parallel
Strand 3	B	65	69	anti-parallel
Strand 4	B	79	81	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	93	first strand
Strand 2	B	99	104	anti-parallel
Strand 3	B	108	113	anti-parallel
Strand 4	B	124	126	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	136	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	B	152	156	anti-parallel
Strand 4	B	162	165	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	184	188	anti-parallel
Strand 3	B	194	199	anti-parallel
Strand 4	B	210	216	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	234	239	anti-parallel
Strand 3	B	243	248	anti-parallel
Strand 4	B	258	259	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	303	307	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	49	first strand
Strand 2	L	52	61	anti-parallel
Strand 3	L	7	13	parallel
Strand 4	L	81	86	parallel
Strand 5	L	114	119	parallel
Strand 6	L	144	147	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ED8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ED8