Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EDE entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9EDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13TRP 196
A
 LEU 198VAL 337
A
 ILE 339PHE 350
B
 ARG 92ASP 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9EDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 32Right-handed alpha
Helix 2
AA2
A
39 41Right-handed 310
Helix 3
AA3
A
76 82Right-handed alpha
Helix 4
AA4
A
84 98Right-handed alpha
Helix 5
AA5
A
127 136Right-handed alpha
Helix 6
AA6
A
139 158Right-handed alpha
Helix 7
AA7
A
184 188Right-handed 310
Helix 8
AA8
A
206 211Right-handed alpha
Helix 9
AA9
A
216 218Right-handed 310
Helix 10
AB1
A
219 234Right-handed alpha
Helix 11
AB2
A
242 253Right-handed alpha
Helix 12
AB3
A
262 273Right-handed alpha
Helix 13
AB4
A
288 293Right-handed alpha
Helix 14
AB5
A
294 298Right-handed 310
Helix 15
AB6
A
301 307Right-handed alpha
Helix 16
AB7
B
119 130Right-handed alpha
Helix 17
AB8
B
133 137Right-handed 310
Helix 18
AB9
B
140 150Right-handed alpha
Helix 19
AC1
B
199 204Right-handed 310
Helix 20
AC2
B
323 328Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9EDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 51first strand
Strand 2
A
56 62anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
115 121anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
219 223anti-parallel
Strand 3
B
174 177anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
212 214anti-parallel
Strand 3
B
180 184anti-parallel
Strand 4
B
187 192anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 274first strand
Strand 2
B
343 346anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 281first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
297 302anti-parallel
Strand 4
B
311 316anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
321 322anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il