Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EDL entry

There are 2 chains in PDB entry 9EDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 12LYS 233
B
 ALA 8LYS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9EDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 23Right-handed alpha
Helix 2
AA2
A
24 34Right-handed alpha
Helix 3
AA3
A
57 74Right-handed alpha
Helix 4
AA4
A
91 128Right-handed alpha
Helix 5
AA5
A
131 143Right-handed alpha
Helix 6
AA6
A
147 158Right-handed alpha
Helix 7
AA7
A
160 170Right-handed alpha
Helix 8
AA8
A
183 187Right-handed 310
Helix 9
AA9
A
188 194Right-handed alpha
Helix 10
AB1
A
195 199Right-handed 310
Helix 11
AB2
A
203 210Right-handed alpha
Helix 12
AB3
A
213 232Right-handed alpha
Helix 13
AB4
B
16 23Right-handed alpha
Helix 14
AB5
B
24 34Right-handed alpha
Helix 15
AB6
B
57 73Right-handed alpha
Helix 16
AB7
B
91 128Right-handed alpha
Helix 17
AB8
B
131 143Right-handed alpha
Helix 18
AB9
B
147 158Right-handed alpha
Helix 19
AC1
B
160 170Right-handed alpha
Helix 20
AC2
B
183 187Right-handed 310
Helix 21
AC3
B
188 194Right-handed alpha
Helix 22
AC4
B
195 199Right-handed 310
Helix 23
AC5
B
203 208Right-handed alpha
Helix 24
AC6
B
213 231Right-handed alpha
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There are 2 sheets in PDB entry 9EDL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
47 53parallel
Strand 4
A
176 181anti-parallel
Strand 5
A
200 202anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
77 83anti-parallel
Strand 3
B
47 53parallel
Strand 4
B
176 181anti-parallel
Strand 5
B
200 202anti-parallel
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