Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EDP entry

There is 1 chain in PDB entry 9EDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 223MET 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9EDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 237Right-handed 310
Helix 2
AA2
A
355 358Right-handed 310
Helix 3
AA3
A
376 378Right-handed 310
Helix 4
AA4
A
453 457Right-handed 310
Helix 5
AA5
A
468 479Right-handed alpha
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There are 3 sheets in PDB entry 9EDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 465first strand
Strand 2
A
440 449anti-parallel
Strand 3
A
248 251anti-parallel
Strand 4
A
519 521anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 465first strand
Strand 2
A
440 449anti-parallel
Strand 3
A
510 514anti-parallel
Strand 4
A
499 506anti-parallel
Strand 5
A
486 493anti-parallel
Strand 6
A
525 533anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
380 385anti-parallel
Strand 3
A
360 367anti-parallel
Strand 4
A
346 353anti-parallel
Strand 5
A
397 405anti-parallel
Strand 6
A
286 291anti-parallel
Strand 7
A
314 321anti-parallel
Strand 8
A
380 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il