Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EDR entry

There are 7 chains in PDB entry 9EDR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	ALA 994
G	MET 1	GLN 191
A	MET 1	GLY 436
B	MET 1	ASP 427
C	MET 1	LEU 268
I	GLU 14	ILE 169
E	UNK 8	PRO 505

There are150 helices in PDB entry 9EDR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	1	17	Right-handed alpha
Helix 2	AA2	D	19	32	Right-handed alpha
Helix 3	AA3	D	33	35	Right-handed 310
Helix 4	AA4	D	36	41	Right-handed alpha
Helix 5	AA5	D	43	54	Right-handed alpha
Helix 6	AA6	D	55	58	Right-handed 310
Helix 7	AA7	D	59	84	Right-handed alpha
Helix 8	AA8	D	90	102	Right-handed alpha
Helix 9	AA9	D	107	126	Right-handed alpha
Helix 10	AB1	D	131	133	Right-handed 310
Helix 11	AB2	D	134	144	Right-handed alpha
Helix 12	AB3	D	151	167	Right-handed alpha
Helix 13	AB4	D	170	174	Right-handed 310
Helix 14	AB5	D	175	180	Right-handed alpha
Helix 15	AB6	D	181	194	Right-handed alpha
Helix 16	AB7	D	195	203	Right-handed alpha
Helix 17	AB8	D	204	218	Right-handed alpha
Helix 18	AB9	D	223	235	Right-handed alpha
Helix 19	AC1	D	236	250	Right-handed alpha
Helix 20	AC2	D	255	277	Right-handed alpha
Helix 21	AC3	D	277	296	Right-handed alpha
Helix 22	AC4	D	297	298	Right-handed 310
Helix 23	AC5	D	299	303	Right-handed 310
Helix 24	AC6	D	304	321	Right-handed alpha
Helix 25	AC7	D	325	336	Right-handed alpha
Helix 26	AC8	D	336	341	Right-handed alpha
Helix 27	AC9	D	353	370	Right-handed alpha
Helix 28	AD1	D	377	394	Right-handed alpha
Helix 29	AD2	D	397	415	Right-handed alpha
Helix 30	AD3	D	415	420	Right-handed alpha
Helix 31	AD4	D	422	432	Right-handed alpha
Helix 32	AD5	D	436	452	Right-handed alpha
Helix 33	AD6	D	458	474	Right-handed alpha
Helix 34	AD7	D	474	479	Right-handed alpha
Helix 35	AD8	D	482	493	Right-handed alpha
Helix 36	AD9	D	493	500	Right-handed alpha
Helix 37	AE1	D	504	515	Right-handed alpha
Helix 38	AE2	D	518	535	Right-handed alpha
Helix 39	AE3	D	541	553	Right-handed alpha
Helix 40	AE4	D	570	587	Right-handed alpha
Helix 41	AE5	D	592	604	Right-handed alpha
Helix 42	AE6	D	611	626	Right-handed alpha
Helix 43	AE7	D	630	640	Right-handed alpha
Helix 44	AE8	D	642	649	Right-handed alpha
Helix 45	AE9	D	650	652	Right-handed 310
Helix 46	AF1	D	654	666	Right-handed alpha
Helix 47	AF2	D	667	669	Right-handed 310
Helix 48	AF3	D	670	688	Right-handed alpha
Helix 49	AF4	D	693	708	Right-handed alpha
Helix 50	AF5	D	719	734	Right-handed alpha
Helix 51	AF6	D	735	741	Right-handed alpha
Helix 52	AF7	D	741	755	Right-handed alpha
Helix 53	AF8	D	757	770	Right-handed alpha
Helix 54	AF9	D	779	791	Right-handed alpha
Helix 55	AG1	D	794	805	Right-handed alpha
Helix 56	AG2	D	810	828	Right-handed alpha
Helix 57	AG3	D	829	843	Right-handed alpha
Helix 58	AG4	D	846	854	Right-handed alpha
Helix 59	AG5	D	855	860	Right-handed alpha
Helix 60	AG6	D	870	888	Right-handed alpha
Helix 61	AG7	D	898	911	Right-handed alpha
Helix 62	AG8	D	914	936	Right-handed alpha
Helix 63	AG9	D	941	965	Right-handed alpha
Helix 64	AH1	D	969	987	Right-handed alpha
Helix 65	AH2	D	988	994	Right-handed alpha
Helix 66	AH3	G	2	15	Right-handed alpha
Helix 67	AH4	G	28	37	Right-handed alpha
Helix 68	AH5	G	38	42	Right-handed 310
Helix 69	AH6	G	73	84	Right-handed 310
Helix 70	AH7	G	98	100	Right-handed 310
Helix 71	AH8	G	101	116	Right-handed alpha
Helix 72	AH9	G	132	136	Right-handed 310
Helix 73	AI1	G	138	157	Right-handed alpha
Helix 74	AI2	G	175	190	Right-handed alpha
Helix 75	AI3	A	10	29	Right-handed alpha
Helix 76	AI4	A	48	51	Right-handed 310
Helix 77	AI5	A	71	81	Right-handed alpha
Helix 78	AI6	A	88	90	Right-handed 310
Helix 79	AI7	A	102	109	Right-handed alpha
Helix 80	AI8	A	109	128	Right-handed alpha
Helix 81	AI9	A	143	161	Right-handed alpha
Helix 82	AJ1	A	174	178	Right-handed 310
Helix 83	AJ2	A	182	196	Right-handed alpha
Helix 84	AJ3	A	206	217	Right-handed alpha
Helix 85	AJ4	A	223	244	Right-handed alpha
Helix 86	AJ5	A	251	260	Right-handed alpha
Helix 87	AJ6	A	279	283	Right-handed 310
Helix 88	AJ7	A	287	295	Right-handed alpha
Helix 89	AJ8	A	296	301	Right-handed 310
Helix 90	AJ9	A	306	310	Right-handed 310
Helix 91	AK1	A	324	339	Right-handed alpha
Helix 92	AK2	A	383	400	Right-handed alpha
Helix 93	AK3	A	404	411	Right-handed alpha
Helix 94	AK4	A	414	436	Right-handed alpha
Helix 95	AK5	B	9	29	Right-handed alpha
Helix 96	AK6	B	40	46	Right-handed alpha
Helix 97	AK7	B	47	49	Right-handed 310
Helix 98	AK8	B	69	79	Right-handed alpha
Helix 99	AK9	B	86	88	Right-handed 310
Helix 100	AL1	B	100	107	Right-handed alpha
Helix 101	AL2	B	107	126	Right-handed alpha
Helix 102	AL3	B	142	159	Right-handed alpha
Helix 103	AL4	B	172	176	Right-handed 310
Helix 104	AL5	B	180	196	Right-handed alpha
Helix 105	AL6	B	204	214	Right-handed alpha
Helix 106	AL7	B	221	237	Right-handed alpha
Helix 107	AL8	B	237	242	Right-handed alpha
Helix 108	AL9	B	249	258	Right-handed alpha
Helix 109	AM1	B	285	295	Right-handed alpha
Helix 110	AM2	B	296	299	Right-handed 310
Helix 111	AM3	B	304	308	Right-handed 310
Helix 112	AM4	B	322	337	Right-handed alpha
Helix 113	AM5	B	338	341	Right-handed 310
Helix 114	AM6	B	373	391	Right-handed alpha
Helix 115	AM7	B	394	401	Right-handed alpha
Helix 116	AM8	B	404	427	Right-handed alpha
Helix 117	AM9	C	2	16	Right-handed alpha
Helix 118	AN1	C	19	37	Right-handed alpha
Helix 119	AN2	C	38	41	Right-handed 310
Helix 120	AN3	C	42	69	Right-handed alpha
Helix 121	AN4	C	223	226	Right-handed 310
Helix 122	AN5	C	255	258	Right-handed 310
Helix 123	AN6	C	259	268	Right-handed alpha
Helix 124	AN7	I	15	23	Right-handed alpha
Helix 125	AN8	I	27	42	Right-handed alpha
Helix 126	AN9	I	46	54	Right-handed alpha
Helix 127	AO1	I	58	73	Right-handed alpha
Helix 128	AO2	I	74	76	Right-handed 310
Helix 129	AO3	I	77	85	Right-handed alpha
Helix 130	AO4	I	89	104	Right-handed alpha
Helix 131	AO5	I	105	107	Right-handed 310
Helix 132	AO6	I	108	116	Right-handed alpha
Helix 133	AO7	I	120	135	Right-handed alpha
Helix 134	AO8	I	137	149	Right-handed alpha
Helix 135	AO9	I	151	165	Right-handed alpha
Helix 136	AP1	E	39	43	Right-handed 310
Helix 137	AP2	E	68	72	Right-handed alpha
Helix 138	AP3	E	140	151	Right-handed alpha
Helix 139	AP4	E	166	176	Right-handed alpha
Helix 140	AP5	E	216	227	Right-handed alpha
Helix 141	AP6	E	241	247	Right-handed alpha
Helix 142	AP7	E	248	252	Right-handed 310
Helix 143	AP8	E	312	322	Right-handed alpha
Helix 144	AP9	E	347	357	Right-handed alpha
Helix 145	AQ1	E	371	385	Right-handed alpha
Helix 146	AQ2	E	396	404	Right-handed alpha
Helix 147	AQ3	E	435	437	Right-handed 310
Helix 148	AQ4	E	449	461	Right-handed alpha
Helix 149	AQ5	E	464	468	Right-handed 310
Helix 150	AQ6	E	488	493	Right-handed 310

There are 13 sheets in PDB entry 9EDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	350	352	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	60	first strand
Strand 2	G	63	70	anti-parallel
Strand 3	G	16	23	parallel
Strand 4	G	89	95	parallel
Strand 5	G	125	131	parallel
Strand 6	G	163	167	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	8	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	116	121	parallel
Strand 3	C	136	147	parallel
Strand 4	C	158	169	parallel
Strand 5	C	183	191	parallel
Strand 6	C	208	213	parallel
Strand 7	C	228	232	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	110	first strand
Strand 2	C	124	127	parallel
Strand 3	C	150	153	parallel
Strand 4	C	172	177	parallel
Strand 5	C	194	199	parallel
Strand 6	C	218	221	parallel
Strand 7	C	248	251	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	14	23	anti-parallel
Strand 3	E	31	37	anti-parallel
Strand 4	E	63	67	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	52	53	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	156	158	parallel
Strand 3	E	182	184	parallel
Strand 4	E	207	209	parallel
Strand 5	E	232	234	parallel
Strand 6	E	258	260	parallel
Strand 7	E	280	282	parallel
Strand 8	E	301	303	parallel
Strand 9	E	327	329	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	439	444	first strand
Strand 2	E	426	431	anti-parallel
Strand 3	E	499	503	parallel
Strand 4	E	469	473	anti-parallel
Strand 5	E	479	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EDR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDR