Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EDS entry

There are 7 chains in PDB entry 9EDS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	ALA 994
E	UNK 1	PRO 505
G	MET 1	GLN 191
A	MET 1	GLY 436
B	MET 1	ASP 427
I	GLU 14	ILE 169
C	ASN 96	LEU 268

There are141 helices in PDB entry 9EDS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	1	17	Right-handed alpha
Helix 2	AA2	D	19	32	Right-handed alpha
Helix 3	AA3	D	33	35	Right-handed 310
Helix 4	AA4	D	36	41	Right-handed alpha
Helix 5	AA5	D	43	54	Right-handed alpha
Helix 6	AA6	D	55	58	Right-handed 310
Helix 7	AA7	D	59	84	Right-handed alpha
Helix 8	AA8	D	90	102	Right-handed alpha
Helix 9	AA9	D	107	126	Right-handed alpha
Helix 10	AB1	D	131	143	Right-handed alpha
Helix 11	AB2	D	151	167	Right-handed alpha
Helix 12	AB3	D	170	174	Right-handed 310
Helix 13	AB4	D	175	180	Right-handed alpha
Helix 14	AB5	D	181	193	Right-handed alpha
Helix 15	AB6	D	195	203	Right-handed alpha
Helix 16	AB7	D	204	218	Right-handed alpha
Helix 17	AB8	D	223	235	Right-handed alpha
Helix 18	AB9	D	236	250	Right-handed alpha
Helix 19	AC1	D	255	277	Right-handed alpha
Helix 20	AC2	D	277	296	Right-handed alpha
Helix 21	AC3	D	304	321	Right-handed alpha
Helix 22	AC4	D	325	336	Right-handed alpha
Helix 23	AC5	D	336	341	Right-handed alpha
Helix 24	AC6	D	353	370	Right-handed alpha
Helix 25	AC7	D	377	395	Right-handed alpha
Helix 26	AC8	D	397	415	Right-handed alpha
Helix 27	AC9	D	415	420	Right-handed alpha
Helix 28	AD1	D	422	432	Right-handed alpha
Helix 29	AD2	D	436	452	Right-handed alpha
Helix 30	AD3	D	458	474	Right-handed alpha
Helix 31	AD4	D	474	479	Right-handed alpha
Helix 32	AD5	D	482	493	Right-handed alpha
Helix 33	AD6	D	493	500	Right-handed alpha
Helix 34	AD7	D	504	514	Right-handed alpha
Helix 35	AD8	D	518	535	Right-handed alpha
Helix 36	AD9	D	541	554	Right-handed alpha
Helix 37	AE1	D	570	587	Right-handed alpha
Helix 38	AE2	D	592	604	Right-handed alpha
Helix 39	AE3	D	611	626	Right-handed alpha
Helix 40	AE4	D	630	640	Right-handed alpha
Helix 41	AE5	D	642	649	Right-handed alpha
Helix 42	AE6	D	650	652	Right-handed 310
Helix 43	AE7	D	654	666	Right-handed alpha
Helix 44	AE8	D	670	689	Right-handed alpha
Helix 45	AE9	D	693	708	Right-handed alpha
Helix 46	AF1	D	719	734	Right-handed alpha
Helix 47	AF2	D	735	741	Right-handed alpha
Helix 48	AF3	D	741	755	Right-handed alpha
Helix 49	AF4	D	757	770	Right-handed alpha
Helix 50	AF5	D	779	791	Right-handed alpha
Helix 51	AF6	D	794	805	Right-handed alpha
Helix 52	AF7	D	810	828	Right-handed alpha
Helix 53	AF8	D	829	844	Right-handed alpha
Helix 54	AF9	D	846	854	Right-handed alpha
Helix 55	AG1	D	855	860	Right-handed alpha
Helix 56	AG2	D	870	888	Right-handed alpha
Helix 57	AG3	D	898	911	Right-handed alpha
Helix 58	AG4	D	914	936	Right-handed alpha
Helix 59	AG5	D	940	965	Right-handed alpha
Helix 60	AG6	D	969	987	Right-handed alpha
Helix 61	AG7	D	988	994	Right-handed alpha
Helix 62	AG8	E	67	72	Right-handed alpha
Helix 63	AG9	E	146	154	Right-handed alpha
Helix 64	AH1	E	167	175	Right-handed alpha
Helix 65	AH2	E	216	225	Right-handed alpha
Helix 66	AH3	E	243	249	Right-handed alpha
Helix 67	AH4	E	313	322	Right-handed alpha
Helix 68	AH5	E	346	357	Right-handed alpha
Helix 69	AH6	E	369	384	Right-handed alpha
Helix 70	AH7	E	385	387	Right-handed 310
Helix 71	AH8	E	395	406	Right-handed alpha
Helix 72	AH9	E	408	413	Right-handed alpha
Helix 73	AI1	E	435	437	Right-handed 310
Helix 74	AI2	E	449	462	Right-handed alpha
Helix 75	AI3	E	488	493	Right-handed 310
Helix 76	AI4	G	2	15	Right-handed alpha
Helix 77	AI5	G	28	37	Right-handed alpha
Helix 78	AI6	G	38	42	Right-handed 310
Helix 79	AI7	G	73	84	Right-handed 310
Helix 80	AI8	G	98	100	Right-handed 310
Helix 81	AI9	G	101	116	Right-handed alpha
Helix 82	AJ1	G	138	157	Right-handed alpha
Helix 83	AJ2	G	175	191	Right-handed alpha
Helix 84	AJ3	A	10	29	Right-handed alpha
Helix 85	AJ4	A	48	51	Right-handed 310
Helix 86	AJ5	A	71	81	Right-handed alpha
Helix 87	AJ6	A	82	86	Right-handed 310
Helix 88	AJ7	A	88	90	Right-handed 310
Helix 89	AJ8	A	102	109	Right-handed alpha
Helix 90	AJ9	A	109	128	Right-handed alpha
Helix 91	AK1	A	143	162	Right-handed alpha
Helix 92	AK2	A	174	178	Right-handed 310
Helix 93	AK3	A	182	196	Right-handed alpha
Helix 94	AK4	A	206	217	Right-handed alpha
Helix 95	AK5	A	223	244	Right-handed alpha
Helix 96	AK6	A	251	260	Right-handed alpha
Helix 97	AK7	A	279	283	Right-handed 310
Helix 98	AK8	A	287	296	Right-handed alpha
Helix 99	AK9	A	306	310	Right-handed 310
Helix 100	AL1	A	324	339	Right-handed alpha
Helix 101	AL2	A	383	401	Right-handed alpha
Helix 102	AL3	A	404	411	Right-handed alpha
Helix 103	AL4	A	415	436	Right-handed alpha
Helix 104	AL5	B	9	29	Right-handed alpha
Helix 105	AL6	B	41	46	Right-handed alpha
Helix 106	AL7	B	47	49	Right-handed 310
Helix 107	AL8	B	69	79	Right-handed alpha
Helix 108	AL9	B	86	90	Right-handed 310
Helix 109	AM1	B	100	107	Right-handed alpha
Helix 110	AM2	B	107	125	Right-handed alpha
Helix 111	AM3	B	142	159	Right-handed alpha
Helix 112	AM4	B	172	176	Right-handed 310
Helix 113	AM5	B	180	196	Right-handed alpha
Helix 114	AM6	B	204	214	Right-handed alpha
Helix 115	AM7	B	221	237	Right-handed alpha
Helix 116	AM8	B	237	242	Right-handed alpha
Helix 117	AM9	B	249	258	Right-handed alpha
Helix 118	AN1	B	285	295	Right-handed alpha
Helix 119	AN2	B	296	299	Right-handed 310
Helix 120	AN3	B	304	308	Right-handed 310
Helix 121	AN4	B	322	337	Right-handed alpha
Helix 122	AN5	B	338	341	Right-handed 310
Helix 123	AN6	B	373	390	Right-handed alpha
Helix 124	AN7	B	394	400	Right-handed alpha
Helix 125	AN8	B	404	425	Right-handed alpha
Helix 126	AN9	I	15	23	Right-handed alpha
Helix 127	AO1	I	27	42	Right-handed alpha
Helix 128	AO2	I	43	45	Right-handed 310
Helix 129	AO3	I	46	54	Right-handed alpha
Helix 130	AO4	I	58	73	Right-handed alpha
Helix 131	AO5	I	74	76	Right-handed 310
Helix 132	AO6	I	77	85	Right-handed alpha
Helix 133	AO7	I	89	104	Right-handed alpha
Helix 134	AO8	I	105	107	Right-handed 310
Helix 135	AO9	I	108	116	Right-handed alpha
Helix 136	AP1	I	120	135	Right-handed alpha
Helix 137	AP2	I	137	149	Right-handed alpha
Helix 138	AP3	I	151	165	Right-handed alpha
Helix 139	AP4	C	223	225	Right-handed 310
Helix 140	AP5	C	255	258	Right-handed 310
Helix 141	AP6	C	259	268	Right-handed alpha

There are 16 sheets in PDB entry 9EDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	350	352	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	14	18	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	31	34	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	52	53	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	128	first strand
Strand 2	E	156	158	parallel
Strand 3	E	182	184	parallel
Strand 4	E	207	209	parallel
Strand 5	E	232	234	parallel
Strand 6	E	258	260	parallel
Strand 7	E	280	282	parallel
Strand 8	E	301	303	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	337	first strand
Strand 2	E	340	341	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	363	first strand
Strand 2	E	366	367	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	439	444	first strand
Strand 2	E	426	431	anti-parallel
Strand 3	E	499	503	parallel
Strand 4	E	469	473	anti-parallel
Strand 5	E	479	481	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	60	first strand
Strand 2	G	63	70	anti-parallel
Strand 3	G	16	22	parallel
Strand 4	G	89	95	parallel
Strand 5	G	125	131	parallel
Strand 6	G	164	167	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	352	356	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	8	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	116	121	parallel
Strand 3	C	136	147	parallel
Strand 4	C	158	169	parallel
Strand 5	C	183	188	parallel
Strand 6	C	208	213	parallel
Strand 7	C	228	232	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	110	first strand
Strand 2	C	124	127	parallel
Strand 3	C	150	153	parallel
Strand 4	C	172	177	parallel
Strand 5	C	194	199	parallel
Strand 6	C	218	221	parallel
Strand 7	C	248	251	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EDS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDS