Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EDT entry

There are 6 chains in PDB entry 9EDT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 4	LEU 1014
G	MET 1	GLN 191
A	MET 1	GLY 436
B	MET 1	ASP 427
F	ASP 13	ALA 137
E	UNK 1	PRO 505

There are136 helices in PDB entry 9EDT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	4	17	Right-handed alpha
Helix 2	AA2	D	19	33	Right-handed alpha
Helix 3	AA3	D	36	42	Right-handed alpha
Helix 4	AA4	D	43	54	Right-handed alpha
Helix 5	AA5	D	59	85	Right-handed alpha
Helix 6	AA6	D	90	102	Right-handed alpha
Helix 7	AA7	D	107	125	Right-handed alpha
Helix 8	AA8	D	131	145	Right-handed alpha
Helix 9	AA9	D	146	148	Right-handed 310
Helix 10	AB1	D	151	167	Right-handed alpha
Helix 11	AB2	D	170	174	Right-handed 310
Helix 12	AB3	D	175	181	Right-handed alpha
Helix 13	AB4	D	181	195	Right-handed alpha
Helix 14	AB5	D	195	203	Right-handed alpha
Helix 15	AB6	D	204	218	Right-handed alpha
Helix 16	AB7	D	220	222	Right-handed 310
Helix 17	AB8	D	223	235	Right-handed alpha
Helix 18	AB9	D	236	250	Right-handed alpha
Helix 19	AC1	D	251	253	Right-handed 310
Helix 20	AC2	D	255	277	Right-handed alpha
Helix 21	AC3	D	277	298	Right-handed alpha
Helix 22	AC4	D	304	321	Right-handed alpha
Helix 23	AC5	D	325	336	Right-handed alpha
Helix 24	AC6	D	336	342	Right-handed alpha
Helix 25	AC7	D	353	371	Right-handed alpha
Helix 26	AC8	D	377	395	Right-handed alpha
Helix 27	AC9	D	397	415	Right-handed alpha
Helix 28	AD1	D	415	420	Right-handed alpha
Helix 29	AD2	D	422	432	Right-handed alpha
Helix 30	AD3	D	436	453	Right-handed alpha
Helix 31	AD4	D	458	474	Right-handed alpha
Helix 32	AD5	D	474	479	Right-handed alpha
Helix 33	AD6	D	482	493	Right-handed alpha
Helix 34	AD7	D	493	500	Right-handed alpha
Helix 35	AD8	D	504	515	Right-handed alpha
Helix 36	AD9	D	518	535	Right-handed alpha
Helix 37	AE1	D	541	553	Right-handed alpha
Helix 38	AE2	D	570	587	Right-handed alpha
Helix 39	AE3	D	592	604	Right-handed alpha
Helix 40	AE4	D	609	626	Right-handed alpha
Helix 41	AE5	D	630	640	Right-handed alpha
Helix 42	AE6	D	642	649	Right-handed alpha
Helix 43	AE7	D	650	652	Right-handed 310
Helix 44	AE8	D	654	669	Right-handed alpha
Helix 45	AE9	D	670	685	Right-handed alpha
Helix 46	AF1	D	688	692	Right-handed 310
Helix 47	AF2	D	693	708	Right-handed alpha
Helix 48	AF3	D	719	734	Right-handed alpha
Helix 49	AF4	D	735	741	Right-handed alpha
Helix 50	AF5	D	741	755	Right-handed alpha
Helix 51	AF6	D	757	770	Right-handed alpha
Helix 52	AF7	D	779	791	Right-handed alpha
Helix 53	AF8	D	794	805	Right-handed alpha
Helix 54	AF9	D	810	828	Right-handed alpha
Helix 55	AG1	D	829	844	Right-handed alpha
Helix 56	AG2	D	846	854	Right-handed alpha
Helix 57	AG3	D	855	860	Right-handed 310
Helix 58	AG4	D	870	888	Right-handed alpha
Helix 59	AG5	D	898	911	Right-handed alpha
Helix 60	AG6	D	914	936	Right-handed alpha
Helix 61	AG7	D	940	965	Right-handed alpha
Helix 62	AG8	D	969	987	Right-handed alpha
Helix 63	AG9	D	988	1001	Right-handed alpha
Helix 64	AH1	D	1003	1007	Right-handed 310
Helix 65	AH2	D	1008	1013	Right-handed alpha
Helix 66	AH3	G	2	15	Right-handed alpha
Helix 67	AH4	G	28	37	Right-handed alpha
Helix 68	AH5	G	76	78	Right-handed 310
Helix 69	AH6	G	79	84	Right-handed alpha
Helix 70	AH7	G	100	116	Right-handed alpha
Helix 71	AH8	G	133	136	Right-handed 310
Helix 72	AH9	G	138	157	Right-handed alpha
Helix 73	AI1	G	175	191	Right-handed alpha
Helix 74	AI2	A	10	29	Right-handed alpha
Helix 75	AI3	A	47	51	Right-handed 310
Helix 76	AI4	A	71	81	Right-handed alpha
Helix 77	AI5	A	88	90	Right-handed 310
Helix 78	AI6	A	102	108	Right-handed alpha
Helix 79	AI7	A	109	128	Right-handed alpha
Helix 80	AI8	A	143	162	Right-handed alpha
Helix 81	AI9	A	182	196	Right-handed alpha
Helix 82	AJ1	A	206	216	Right-handed alpha
Helix 83	AJ2	A	223	244	Right-handed alpha
Helix 84	AJ3	A	251	260	Right-handed alpha
Helix 85	AJ4	A	279	283	Right-handed 310
Helix 86	AJ5	A	287	297	Right-handed alpha
Helix 87	AJ6	A	298	301	Right-handed 310
Helix 88	AJ7	A	306	310	Right-handed 310
Helix 89	AJ8	A	324	339	Right-handed alpha
Helix 90	AJ9	A	384	402	Right-handed alpha
Helix 91	AK1	A	404	412	Right-handed alpha
Helix 92	AK2	A	414	436	Right-handed alpha
Helix 93	AK3	B	10	28	Right-handed alpha
Helix 94	AK4	B	40	46	Right-handed alpha
Helix 95	AK5	B	47	49	Right-handed 310
Helix 96	AK6	B	69	78	Right-handed alpha
Helix 97	AK7	B	81	85	Right-handed 310
Helix 98	AK8	B	86	88	Right-handed 310
Helix 99	AK9	B	100	106	Right-handed alpha
Helix 100	AL1	B	107	126	Right-handed alpha
Helix 101	AL2	B	142	159	Right-handed alpha
Helix 102	AL3	B	180	196	Right-handed alpha
Helix 103	AL4	B	204	214	Right-handed alpha
Helix 104	AL5	B	221	242	Right-handed alpha
Helix 105	AL6	B	249	258	Right-handed alpha
Helix 106	AL7	B	285	295	Right-handed alpha
Helix 107	AL8	B	296	299	Right-handed 310
Helix 108	AL9	B	304	308	Right-handed 310
Helix 109	AM1	B	322	337	Right-handed alpha
Helix 110	AM2	B	338	341	Right-handed 310
Helix 111	AM3	B	374	392	Right-handed alpha
Helix 112	AM4	B	394	402	Right-handed alpha
Helix 113	AM5	B	404	427	Right-handed alpha
Helix 114	AM6	F	14	25	Right-handed alpha
Helix 115	AM7	F	26	37	Right-handed alpha
Helix 116	AM8	F	49	57	Right-handed alpha
Helix 117	AM9	F	59	70	Right-handed alpha
Helix 118	AN1	F	82	91	Right-handed alpha
Helix 119	AN2	F	92	102	Right-handed alpha
Helix 120	AN3	F	115	123	Right-handed alpha
Helix 121	AN4	F	125	135	Right-handed alpha
Helix 122	AN5	E	39	43	Right-handed 310
Helix 123	AN6	E	68	72	Right-handed alpha
Helix 124	AN7	E	81	89	Right-handed alpha
Helix 125	AN8	E	140	151	Right-handed alpha
Helix 126	AN9	E	166	176	Right-handed alpha
Helix 127	AO1	E	216	224	Right-handed alpha
Helix 128	AO2	E	241	247	Right-handed alpha
Helix 129	AO3	E	248	252	Right-handed 310
Helix 130	AO4	E	313	322	Right-handed alpha
Helix 131	AO5	E	346	357	Right-handed alpha
Helix 132	AO6	E	369	386	Right-handed alpha
Helix 133	AO7	E	395	405	Right-handed alpha
Helix 134	AO8	E	435	439	Right-handed 310
Helix 135	AO9	E	449	462	Right-handed alpha
Helix 136	AP1	E	488	493	Right-handed 310

There are 12 sheets in PDB entry 9EDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	350	352	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	60	first strand
Strand 2	G	63	70	anti-parallel
Strand 3	G	16	23	parallel
Strand 4	G	89	95	parallel
Strand 5	G	125	131	parallel
Strand 6	G	163	168	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	5	8	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	8	parallel
Strand 4	B	130	138	parallel
Strand 5	B	164	170	parallel
Strand 6	B	199	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	11	first strand
Strand 2	E	14	24	anti-parallel
Strand 3	E	27	37	anti-parallel
Strand 4	E	63	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	52	53	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	E	134	136	parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	156	158	parallel
Strand 3	E	182	184	parallel
Strand 4	E	207	209	parallel
Strand 5	E	232	234	parallel
Strand 6	E	258	260	parallel
Strand 7	E	280	282	parallel
Strand 8	E	301	303	parallel
Strand 9	E	327	329	parallel
Strand 10	E	362	363	parallel
Strand 11	E	366	367	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	444	first strand
Strand 2	E	426	431	anti-parallel
Strand 3	E	499	503	parallel
Strand 4	E	469	473	anti-parallel
Strand 5	E	479	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EDT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EDT