Analysis of interatomic Contacts of Structural Units in PDB entry:
9EE7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EE7 entry

There is 1 chain in PDB entry 9EE7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9EE7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 129Right-handed 310
Helix 2
AA2
A
130 137Right-handed alpha
Helix 3
AA3
A
165 173Right-handed alpha
Helix 4
AA4
A
179 189Right-handed alpha
Helix 5
AA5
A
189 198Right-handed alpha
Helix 6
AA6
A
199 210Right-handed alpha
Helix 7
AA7
A
211 214Right-handed 310
Helix 8
AA8
A
219 226Right-handed alpha
Helix 9
AA9
A
227 229Right-handed 310
Helix 10
AB1
A
245 251Right-handed alpha
Helix 11
AB2
A
260 272Right-handed alpha
Helix 12
AB3
A
295 306Right-handed alpha
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There are 5 sheets in PDB entry 9EE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
110 116anti-parallel
Strand 4
A
100 105anti-parallel
Strand 5
A
77 79anti-parallel
Strand 6
A
82 83anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
28 31parallel
Strand 3
A
51 55anti-parallel
Strand 4
A
68 72anti-parallel
Strand 5
A
89 92anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
119 122parallel
Strand 3
A
152 154parallel
Strand 4
A
177 178parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
234 237parallel
Strand 3
A
277 281parallel
Strand 4
A
291 294parallel
Strand 5
A
286 288anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
234 237parallel
Strand 3
A
277 281parallel
Strand 4
A
313 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il