Analysis of interatomic Contacts of Structural Units in PDB entry:
9EEA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EEA entry

There are 5 chains in PDB entry 9EEA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	ILE 303
B	ASP 5	ASN 340
C	GLN 11	ARG 62
D	GLU 10	LEU 383
E	GLN 1	SER 128

There are 29 helices in PDB entry 9EEA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	33	Right-handed alpha
Helix 2	AA2	A	39	69	Right-handed alpha
Helix 3	AA3	A	75	108	Right-handed alpha
Helix 4	AA4	A	108	116	Right-handed alpha
Helix 5	AA5	A	117	137	Right-handed alpha
Helix 6	AA6	A	138	142	Right-handed 310
Helix 7	AA7	A	168	172	Right-handed alpha
Helix 8	AA8	A	173	181	Right-handed alpha
Helix 9	AA9	A	181	186	Right-handed alpha
Helix 10	AB1	A	186	210	Right-handed alpha
Helix 11	AB2	A	224	259	Right-handed alpha
Helix 12	AB3	A	266	288	Right-handed alpha
Helix 13	AB4	A	295	302	Right-handed alpha
Helix 14	AB5	B	7	24	Right-handed alpha
Helix 15	AB6	B	29	34	Right-handed alpha
Helix 16	AB7	C	12	24	Right-handed alpha
Helix 17	AB8	C	29	39	Right-handed alpha
Helix 18	AB9	D	12	40	Right-handed alpha
Helix 19	AC1	D	52	56	Right-handed 310
Helix 20	AC2	D	233	238	Right-handed 310
Helix 21	AC3	D	252	269	Right-handed alpha
Helix 22	AC4	D	270	273	Right-handed 310
Helix 23	AC5	D	283	294	Right-handed alpha
Helix 24	AC6	D	297	302	Right-handed alpha
Helix 25	AC7	D	303	308	Right-handed 310
Helix 26	AC8	D	321	342	Right-handed alpha
Helix 27	AC9	D	360	381	Right-handed alpha
Helix 28	AD1	E	28	32	Right-handed 310
Helix 29	AD2	E	87	91	Right-handed 310

There are 12 sheets in PDB entry 9EEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	135	138	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	151	153	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	210	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	295	298	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	213	first strand
Strand 2	D	218	223	anti-parallel
Strand 3	D	42	47	parallel
Strand 4	D	243	249	parallel
Strand 5	D	277	282	parallel
Strand 6	D	349	350	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	8	first strand
Strand 2	E	20	25	anti-parallel
Strand 3	E	78	80	anti-parallel
Strand 4	E	72	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	122	126	parallel
Strand 3	E	92	94	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	59	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	82	83	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EEA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EEA