Analysis of interatomic Contacts of Structural Units in PDB entry:
9EEB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EEB entry

There are 6 chains in PDB entry 9EEB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	UNK 126	PRO 505
G	MET 1	GLN 191
B	MET 1	ASP 427
F	ASP 13	ALA 137
D	ILE 4	LEU 1014
A	MET 1	GLY 436

There are132 helices in PDB entry 9EEB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	140	151	Right-handed alpha
Helix 2	AA2	E	166	176	Right-handed alpha
Helix 3	AA3	E	196	200	Right-handed 310
Helix 4	AA4	E	216	225	Right-handed alpha
Helix 5	AA5	E	241	247	Right-handed alpha
Helix 6	AA6	E	248	252	Right-handed 310
Helix 7	AA7	E	312	322	Right-handed alpha
Helix 8	AA8	E	348	356	Right-handed alpha
Helix 9	AA9	E	371	386	Right-handed alpha
Helix 10	AB1	E	395	405	Right-handed alpha
Helix 11	AB2	E	435	439	Right-handed 310
Helix 12	AB3	E	449	462	Right-handed alpha
Helix 13	AB4	E	488	493	Right-handed 310
Helix 14	AB5	G	2	15	Right-handed alpha
Helix 15	AB6	G	28	37	Right-handed alpha
Helix 16	AB7	G	76	78	Right-handed 310
Helix 17	AB8	G	79	84	Right-handed alpha
Helix 18	AB9	G	100	116	Right-handed alpha
Helix 19	AC1	G	133	136	Right-handed 310
Helix 20	AC2	G	138	157	Right-handed alpha
Helix 21	AC3	G	175	191	Right-handed alpha
Helix 22	AC4	B	10	28	Right-handed alpha
Helix 23	AC5	B	40	46	Right-handed alpha
Helix 24	AC6	B	47	49	Right-handed 310
Helix 25	AC7	B	69	78	Right-handed alpha
Helix 26	AC8	B	81	85	Right-handed 310
Helix 27	AC9	B	86	88	Right-handed 310
Helix 28	AD1	B	100	106	Right-handed alpha
Helix 29	AD2	B	107	126	Right-handed alpha
Helix 30	AD3	B	142	159	Right-handed alpha
Helix 31	AD4	B	180	196	Right-handed alpha
Helix 32	AD5	B	204	214	Right-handed alpha
Helix 33	AD6	B	221	242	Right-handed alpha
Helix 34	AD7	B	249	258	Right-handed alpha
Helix 35	AD8	B	285	295	Right-handed alpha
Helix 36	AD9	B	296	299	Right-handed 310
Helix 37	AE1	B	304	308	Right-handed 310
Helix 38	AE2	B	322	337	Right-handed alpha
Helix 39	AE3	B	338	341	Right-handed 310
Helix 40	AE4	B	374	392	Right-handed alpha
Helix 41	AE5	B	394	402	Right-handed alpha
Helix 42	AE6	B	404	427	Right-handed alpha
Helix 43	AE7	F	14	25	Right-handed alpha
Helix 44	AE8	F	26	37	Right-handed alpha
Helix 45	AE9	F	49	57	Right-handed alpha
Helix 46	AF1	F	59	70	Right-handed alpha
Helix 47	AF2	F	82	91	Right-handed alpha
Helix 48	AF3	F	92	102	Right-handed alpha
Helix 49	AF4	F	115	123	Right-handed alpha
Helix 50	AF5	F	125	136	Right-handed alpha
Helix 51	AF6	D	5	17	Right-handed alpha
Helix 52	AF7	D	19	33	Right-handed alpha
Helix 53	AF8	D	36	42	Right-handed alpha
Helix 54	AF9	D	43	54	Right-handed alpha
Helix 55	AG1	D	59	85	Right-handed alpha
Helix 56	AG2	D	90	102	Right-handed alpha
Helix 57	AG3	D	107	125	Right-handed alpha
Helix 58	AG4	D	131	145	Right-handed alpha
Helix 59	AG5	D	146	148	Right-handed 310
Helix 60	AG6	D	151	167	Right-handed alpha
Helix 61	AG7	D	170	174	Right-handed 310
Helix 62	AG8	D	175	180	Right-handed alpha
Helix 63	AG9	D	181	195	Right-handed alpha
Helix 64	AH1	D	195	203	Right-handed alpha
Helix 65	AH2	D	204	218	Right-handed alpha
Helix 66	AH3	D	220	222	Right-handed 310
Helix 67	AH4	D	223	235	Right-handed alpha
Helix 68	AH5	D	236	250	Right-handed alpha
Helix 69	AH6	D	255	277	Right-handed alpha
Helix 70	AH7	D	277	298	Right-handed alpha
Helix 71	AH8	D	304	321	Right-handed alpha
Helix 72	AH9	D	325	336	Right-handed alpha
Helix 73	AI1	D	336	342	Right-handed alpha
Helix 74	AI2	D	353	371	Right-handed alpha
Helix 75	AI3	D	377	394	Right-handed alpha
Helix 76	AI4	D	397	415	Right-handed alpha
Helix 77	AI5	D	415	420	Right-handed alpha
Helix 78	AI6	D	422	432	Right-handed alpha
Helix 79	AI7	D	436	453	Right-handed alpha
Helix 80	AI8	D	458	474	Right-handed alpha
Helix 81	AI9	D	474	479	Right-handed alpha
Helix 82	AJ1	D	482	493	Right-handed alpha
Helix 83	AJ2	D	493	500	Right-handed alpha
Helix 84	AJ3	D	504	515	Right-handed alpha
Helix 85	AJ4	D	518	535	Right-handed alpha
Helix 86	AJ5	D	541	553	Right-handed alpha
Helix 87	AJ6	D	570	587	Right-handed alpha
Helix 88	AJ7	D	592	604	Right-handed alpha
Helix 89	AJ8	D	609	626	Right-handed alpha
Helix 90	AJ9	D	630	640	Right-handed alpha
Helix 91	AK1	D	642	649	Right-handed alpha
Helix 92	AK2	D	650	652	Right-handed 310
Helix 93	AK3	D	654	669	Right-handed alpha
Helix 94	AK4	D	670	685	Right-handed alpha
Helix 95	AK5	D	688	692	Right-handed 310
Helix 96	AK6	D	693	708	Right-handed alpha
Helix 97	AK7	D	719	734	Right-handed alpha
Helix 98	AK8	D	735	741	Right-handed alpha
Helix 99	AK9	D	741	755	Right-handed alpha
Helix 100	AL1	D	757	770	Right-handed alpha
Helix 101	AL2	D	779	791	Right-handed alpha
Helix 102	AL3	D	794	805	Right-handed alpha
Helix 103	AL4	D	810	828	Right-handed alpha
Helix 104	AL5	D	829	843	Right-handed alpha
Helix 105	AL6	D	846	854	Right-handed alpha
Helix 106	AL7	D	855	860	Right-handed 310
Helix 107	AL8	D	870	888	Right-handed alpha
Helix 108	AL9	D	898	911	Right-handed alpha
Helix 109	AM1	D	914	936	Right-handed alpha
Helix 110	AM2	D	940	965	Right-handed alpha
Helix 111	AM3	D	969	987	Right-handed alpha
Helix 112	AM4	D	988	1001	Right-handed alpha
Helix 113	AM5	D	1002	1007	Right-handed 310
Helix 114	AM6	D	1008	1013	Right-handed alpha
Helix 115	AM7	A	10	29	Right-handed alpha
Helix 116	AM8	A	47	51	Right-handed 310
Helix 117	AM9	A	71	81	Right-handed alpha
Helix 118	AN1	A	88	90	Right-handed 310
Helix 119	AN2	A	102	108	Right-handed alpha
Helix 120	AN3	A	109	128	Right-handed alpha
Helix 121	AN4	A	143	161	Right-handed alpha
Helix 122	AN5	A	182	195	Right-handed alpha
Helix 123	AN6	A	206	218	Right-handed alpha
Helix 124	AN7	A	223	244	Right-handed alpha
Helix 125	AN8	A	251	260	Right-handed alpha
Helix 126	AN9	A	279	283	Right-handed 310
Helix 127	AO1	A	287	297	Right-handed alpha
Helix 128	AO2	A	298	301	Right-handed 310
Helix 129	AO3	A	324	339	Right-handed alpha
Helix 130	AO4	A	384	402	Right-handed alpha
Helix 131	AO5	A	404	412	Right-handed alpha
Helix 132	AO6	A	414	436	Right-handed alpha

There are 9 sheets in PDB entry 9EEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	156	158	parallel
Strand 3	E	182	184	parallel
Strand 4	E	207	209	parallel
Strand 5	E	232	234	parallel
Strand 6	E	258	260	parallel
Strand 7	E	280	282	parallel
Strand 8	E	301	303	parallel
Strand 9	E	327	329	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	444	first strand
Strand 2	E	426	431	anti-parallel
Strand 3	E	499	503	parallel
Strand 4	E	469	473	anti-parallel
Strand 5	E	479	481	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	60	first strand
Strand 2	G	63	70	anti-parallel
Strand 3	G	16	23	parallel
Strand 4	G	89	95	parallel
Strand 5	G	125	131	parallel
Strand 6	G	163	168	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	164	170	parallel
Strand 6	B	199	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	350	352	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	5	8	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EEB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EEB