Analysis of interatomic Contacts of Structural Units in PDB entry:
9EEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EEF entry

There are 4 chains in PDB entry 9EEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 103THR 491
B
 GLY 103THR 491
C
 GLY 103THR 491
D
 GLY 103THR 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 9EEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 124Right-handed alpha
Helix 2
AA2
A
132 137Right-handed alpha
Helix 3
AA3
A
152 165Right-handed alpha
Helix 4
AA4
A
176 187Right-handed alpha
Helix 5
AA5
A
190 202Right-handed alpha
Helix 6
AA6
A
215 225Right-handed alpha
Helix 7
AA7
A
226 229Right-handed 310
Helix 8
AA8
A
230 254Right-handed alpha
Helix 9
AA9
A
293 316Right-handed alpha
Helix 10
AB1
A
319 325Right-handed alpha
Helix 11
AB2
A
326 335Right-handed alpha
Helix 12
AB3
A
336 348Right-handed alpha
Helix 13
AB4
A
360 370Right-handed alpha
Helix 14
AB5
A
371 379Right-handed 310
Helix 15
AB6
A
382 394Right-handed alpha
Helix 16
AB7
A
395 418Right-handed alpha
Helix 17
AB8
A
430 433Right-handed 310
Helix 18
AB9
A
434 443Right-handed alpha
Helix 19
AC1
A
456 473Right-handed alpha
Helix 20
AC2
A
475 489Right-handed alpha
Helix 21
AC3
B
119 124Right-handed alpha
Helix 22
AC4
B
132 137Right-handed alpha
Helix 23
AC5
B
152 165Right-handed alpha
Helix 24
AC6
B
176 187Right-handed alpha
Helix 25
AC7
B
190 202Right-handed alpha
Helix 26
AC8
B
215 225Right-handed alpha
Helix 27
AC9
B
226 229Right-handed 310
Helix 28
AD1
B
230 254Right-handed alpha
Helix 29
AD2
B
293 316Right-handed alpha
Helix 30
AD3
B
319 325Right-handed alpha
Helix 31
AD4
B
326 335Right-handed alpha
Helix 32
AD5
B
336 348Right-handed alpha
Helix 33
AD6
B
360 370Right-handed alpha
Helix 34
AD7
B
371 379Right-handed 310
Helix 35
AD8
B
382 394Right-handed alpha
Helix 36
AD9
B
395 418Right-handed alpha
Helix 37
AE1
B
430 433Right-handed 310
Helix 38
AE2
B
434 443Right-handed alpha
Helix 39
AE3
B
456 473Right-handed alpha
Helix 40
AE4
B
475 489Right-handed alpha
Helix 41
AE5
C
119 124Right-handed alpha
Helix 42
AE6
C
132 137Right-handed alpha
Helix 43
AE7
C
152 165Right-handed alpha
Helix 44
AE8
C
176 187Right-handed alpha
Helix 45
AE9
C
190 202Right-handed alpha
Helix 46
AF1
C
215 225Right-handed alpha
Helix 47
AF2
C
226 229Right-handed 310
Helix 48
AF3
C
230 254Right-handed alpha
Helix 49
AF4
C
293 316Right-handed alpha
Helix 50
AF5
C
319 325Right-handed alpha
Helix 51
AF6
C
326 335Right-handed alpha
Helix 52
AF7
C
336 348Right-handed alpha
Helix 53
AF8
C
360 370Right-handed alpha
Helix 54
AF9
C
371 379Right-handed 310
Helix 55
AG1
C
382 394Right-handed alpha
Helix 56
AG2
C
395 418Right-handed alpha
Helix 57
AG3
C
430 433Right-handed 310
Helix 58
AG4
C
434 443Right-handed alpha
Helix 59
AG5
C
456 473Right-handed alpha
Helix 60
AG6
C
475 489Right-handed alpha
Helix 61
AG7
D
119 124Right-handed alpha
Helix 62
AG8
D
132 137Right-handed alpha
Helix 63
AG9
D
152 165Right-handed alpha
Helix 64
AH1
D
176 187Right-handed alpha
Helix 65
AH2
D
190 202Right-handed alpha
Helix 66
AH3
D
215 225Right-handed alpha
Helix 67
AH4
D
226 229Right-handed 310
Helix 68
AH5
D
230 254Right-handed alpha
Helix 69
AH6
D
293 316Right-handed alpha
Helix 70
AH7
D
319 325Right-handed alpha
Helix 71
AH8
D
326 335Right-handed alpha
Helix 72
AH9
D
336 348Right-handed alpha
Helix 73
AI1
D
360 370Right-handed alpha
Helix 74
AI2
D
371 379Right-handed 310
Helix 75
AI3
D
382 394Right-handed alpha
Helix 76
AI4
D
395 418Right-handed alpha
Helix 77
AI5
D
430 433Right-handed 310
Helix 78
AI6
D
434 443Right-handed alpha
Helix 79
AI7
D
456 473Right-handed alpha
Helix 80
AI8
D
475 489Right-handed alpha
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There are 4 sheets in PDB entry 9EEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 118first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
146 149parallel
Strand 4
A
140 141anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 118first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
146 149parallel
Strand 4
B
140 141anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 118first strand
Strand 2
C
105 110anti-parallel
Strand 3
C
146 149parallel
Strand 4
C
140 141anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 118first strand
Strand 2
D
105 110anti-parallel
Strand 3
D
146 149parallel
Strand 4
D
140 141anti-parallel
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