Analysis of interatomic Contacts of Structural Units in PDB entry:
9EEM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EEM entry

There are 12 chains in PDB entry 9EEM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LEU 310
B	ALA 1	LEU 310
C	ALA 1	LEU 310
D	LEU 7	ASN 153
E	LEU 7	ASN 153
F	ALA 1	LEU 310
G	ALA 1	LEU 310
H	LEU 7	ASN 153
I	LEU 7	ASN 153
J	LEU 7	ASN 153
K	ALA 1	LEU 310
L	LEU 7	ASN 153

There are120 helices in PDB entry 9EEM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	16	33	Right-handed alpha
Helix 3	AA3	A	53	66	Right-handed alpha
Helix 4	AA4	A	79	84	Right-handed alpha
Helix 5	AA5	A	87	97	Right-handed alpha
Helix 6	AA6	A	110	119	Right-handed alpha
Helix 7	AA7	A	134	150	Right-handed alpha
Helix 8	AA8	A	166	177	Right-handed alpha
Helix 9	AA9	A	189	193	Right-handed 310
Helix 10	AB1	A	195	205	Right-handed alpha
Helix 11	AB2	A	215	219	Right-handed 310
Helix 12	AB3	A	231	235	Right-handed 310
Helix 13	AB4	A	236	243	Right-handed 310
Helix 14	AB5	A	250	255	Right-handed 310
Helix 15	AB6	A	274	278	Right-handed 310
Helix 16	AB7	A	284	291	Right-handed alpha
Helix 17	AB8	A	291	305	Right-handed alpha
Helix 18	AB9	B	11	15	Right-handed 310
Helix 19	AC1	B	16	33	Right-handed alpha
Helix 20	AC2	B	53	66	Right-handed alpha
Helix 21	AC3	B	79	84	Right-handed alpha
Helix 22	AC4	B	87	97	Right-handed alpha
Helix 23	AC5	B	110	119	Right-handed alpha
Helix 24	AC6	B	134	150	Right-handed alpha
Helix 25	AC7	B	166	177	Right-handed alpha
Helix 26	AC8	B	189	193	Right-handed 310
Helix 27	AC9	B	195	205	Right-handed alpha
Helix 28	AD1	B	215	219	Right-handed 310
Helix 29	AD2	B	231	235	Right-handed 310
Helix 30	AD3	B	236	243	Right-handed 310
Helix 31	AD4	B	250	255	Right-handed 310
Helix 32	AD5	B	274	278	Right-handed 310
Helix 33	AD6	B	284	291	Right-handed alpha
Helix 34	AD7	B	291	305	Right-handed alpha
Helix 35	AD8	C	11	15	Right-handed 310
Helix 36	AD9	C	16	33	Right-handed alpha
Helix 37	AE1	C	53	66	Right-handed alpha
Helix 38	AE2	C	79	84	Right-handed alpha
Helix 39	AE3	C	87	97	Right-handed alpha
Helix 40	AE4	C	110	119	Right-handed alpha
Helix 41	AE5	C	134	150	Right-handed alpha
Helix 42	AE6	C	166	177	Right-handed alpha
Helix 43	AE7	C	189	193	Right-handed 310
Helix 44	AE8	C	195	205	Right-handed alpha
Helix 45	AE9	C	215	219	Right-handed 310
Helix 46	AF1	C	231	235	Right-handed 310
Helix 47	AF2	C	236	243	Right-handed 310
Helix 48	AF3	C	250	255	Right-handed 310
Helix 49	AF4	C	274	278	Right-handed 310
Helix 50	AF5	C	284	291	Right-handed alpha
Helix 51	AF6	C	291	305	Right-handed alpha
Helix 52	AF7	D	25	33	Right-handed alpha
Helix 53	AF8	D	67	78	Right-handed alpha
Helix 54	AF9	D	147	153	Right-handed alpha
Helix 55	AG1	E	25	33	Right-handed alpha
Helix 56	AG2	E	67	78	Right-handed alpha
Helix 57	AG3	E	147	153	Right-handed alpha
Helix 58	AG4	F	11	15	Right-handed 310
Helix 59	AG5	F	16	33	Right-handed alpha
Helix 60	AG6	F	53	66	Right-handed alpha
Helix 61	AG7	F	79	84	Right-handed alpha
Helix 62	AG8	F	87	97	Right-handed alpha
Helix 63	AG9	F	110	119	Right-handed alpha
Helix 64	AH1	F	134	150	Right-handed alpha
Helix 65	AH2	F	166	177	Right-handed alpha
Helix 66	AH3	F	189	193	Right-handed 310
Helix 67	AH4	F	195	205	Right-handed alpha
Helix 68	AH5	F	215	219	Right-handed 310
Helix 69	AH6	F	231	235	Right-handed 310
Helix 70	AH7	F	236	243	Right-handed 310
Helix 71	AH8	F	250	255	Right-handed 310
Helix 72	AH9	F	274	278	Right-handed 310
Helix 73	AI1	F	284	291	Right-handed alpha
Helix 74	AI2	F	291	305	Right-handed alpha
Helix 75	AI3	G	11	15	Right-handed 310
Helix 76	AI4	G	16	33	Right-handed alpha
Helix 77	AI5	G	53	66	Right-handed alpha
Helix 78	AI6	G	79	84	Right-handed alpha
Helix 79	AI7	G	87	97	Right-handed alpha
Helix 80	AI8	G	110	119	Right-handed alpha
Helix 81	AI9	G	134	150	Right-handed alpha
Helix 82	AJ1	G	166	177	Right-handed alpha
Helix 83	AJ2	G	189	193	Right-handed 310
Helix 84	AJ3	G	195	205	Right-handed alpha
Helix 85	AJ4	G	215	219	Right-handed 310
Helix 86	AJ5	G	231	235	Right-handed 310
Helix 87	AJ6	G	236	243	Right-handed 310
Helix 88	AJ7	G	250	255	Right-handed 310
Helix 89	AJ8	G	274	278	Right-handed 310
Helix 90	AJ9	G	284	291	Right-handed alpha
Helix 91	AK1	G	291	305	Right-handed alpha
Helix 92	AK2	H	25	34	Right-handed alpha
Helix 93	AK3	H	67	75	Right-handed alpha
Helix 94	AK4	H	147	152	Right-handed alpha
Helix 95	AK5	I	25	34	Right-handed alpha
Helix 96	AK6	I	67	75	Right-handed alpha
Helix 97	AK7	I	147	152	Right-handed alpha
Helix 98	AK8	J	25	34	Right-handed alpha
Helix 99	AK9	J	67	75	Right-handed alpha
Helix 100	AL1	J	147	152	Right-handed alpha
Helix 101	AL2	K	11	15	Right-handed 310
Helix 102	AL3	K	16	33	Right-handed alpha
Helix 103	AL4	K	53	66	Right-handed alpha
Helix 104	AL5	K	79	84	Right-handed alpha
Helix 105	AL6	K	87	97	Right-handed alpha
Helix 106	AL7	K	110	119	Right-handed alpha
Helix 107	AL8	K	134	150	Right-handed alpha
Helix 108	AL9	K	166	177	Right-handed alpha
Helix 109	AM1	K	189	193	Right-handed 310
Helix 110	AM2	K	195	205	Right-handed alpha
Helix 111	AM3	K	215	219	Right-handed 310
Helix 112	AM4	K	231	235	Right-handed 310
Helix 113	AM5	K	236	243	Right-handed 310
Helix 114	AM6	K	250	255	Right-handed 310
Helix 115	AM7	K	274	278	Right-handed 310
Helix 116	AM8	K	284	291	Right-handed alpha
Helix 117	AM9	K	291	305	Right-handed alpha
Helix 118	AN1	L	25	33	Right-handed alpha
Helix 119	AN2	L	67	78	Right-handed alpha
Helix 120	AN3	L	147	153	Right-handed alpha

There are 21 sheets in PDB entry 9EEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	73	first strand
Strand 2	A	43	48	parallel
Strand 3	A	101	106	parallel
Strand 4	A	124	129	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	183	187	parallel
Strand 3	A	156	161	parallel
Strand 4	A	224	228	parallel
Strand 5	A	262	264	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	73	first strand
Strand 2	B	43	48	parallel
Strand 3	B	101	106	parallel
Strand 4	B	124	129	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	183	187	parallel
Strand 3	B	156	161	parallel
Strand 4	B	224	228	parallel
Strand 5	B	262	264	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	73	first strand
Strand 2	C	43	48	parallel
Strand 3	C	101	106	parallel
Strand 4	C	124	129	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	183	187	parallel
Strand 3	C	156	161	parallel
Strand 4	C	224	228	parallel
Strand 5	C	262	264	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	82	87	anti-parallel
Strand 3	D	15	22	anti-parallel
Strand 4	D	54	62	anti-parallel
Strand 5	D	42	50	anti-parallel
Strand 6	H	42	50	anti-parallel
Strand 7	H	54	62	anti-parallel
Strand 8	H	15	22	anti-parallel
Strand 9	H	82	87	anti-parallel
Strand 10	H	90	95	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	104	first strand
Strand 2	D	124	130	anti-parallel
Strand 3	D	133	138	anti-parallel
Strand 4	D	144	146	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	95	first strand
Strand 2	E	82	87	anti-parallel
Strand 3	E	15	22	anti-parallel
Strand 4	E	54	62	anti-parallel
Strand 5	E	42	50	anti-parallel
Strand 6	I	42	50	anti-parallel
Strand 7	I	54	62	anti-parallel
Strand 8	I	15	22	anti-parallel
Strand 9	I	82	87	anti-parallel
Strand 10	I	90	95	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	104	first strand
Strand 2	E	124	130	anti-parallel
Strand 3	E	133	138	anti-parallel
Strand 4	E	144	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	73	first strand
Strand 2	F	43	48	parallel
Strand 3	F	101	106	parallel
Strand 4	F	124	129	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	212	first strand
Strand 2	F	183	187	parallel
Strand 3	F	156	161	parallel
Strand 4	F	224	228	parallel
Strand 5	F	262	264	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	73	first strand
Strand 2	G	43	48	parallel
Strand 3	G	101	106	parallel
Strand 4	G	124	129	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	212	first strand
Strand 2	G	183	187	parallel
Strand 3	G	156	161	parallel
Strand 4	G	224	228	parallel
Strand 5	G	262	264	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	104	first strand
Strand 2	H	124	130	anti-parallel
Strand 3	H	133	138	anti-parallel
Strand 4	H	144	146	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	102	104	first strand
Strand 2	I	124	130	anti-parallel
Strand 3	I	133	138	anti-parallel
Strand 4	I	144	146	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	90	95	first strand
Strand 2	J	82	87	anti-parallel
Strand 3	J	15	22	anti-parallel
Strand 4	J	54	62	anti-parallel
Strand 5	J	42	50	anti-parallel
Strand 6	L	42	50	anti-parallel
Strand 7	L	54	62	anti-parallel
Strand 8	L	15	22	anti-parallel
Strand 9	L	82	87	anti-parallel
Strand 10	L	90	95	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	102	104	first strand
Strand 2	J	124	130	anti-parallel
Strand 3	J	133	138	anti-parallel
Strand 4	J	144	146	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	73	first strand
Strand 2	K	43	48	parallel
Strand 3	K	101	106	parallel
Strand 4	K	124	129	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	209	212	first strand
Strand 2	K	183	187	parallel
Strand 3	K	156	161	parallel
Strand 4	K	224	228	parallel
Strand 5	K	262	264	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	102	104	first strand
Strand 2	L	124	130	anti-parallel
Strand 3	L	133	138	anti-parallel
Strand 4	L	144	146	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EEM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EEM