Analysis of interatomic Contacts of Structural Units in PDB entry:
9EF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EF0 entry

There is 1 chain in PDB entry 9EF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 66SER 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9EF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 77Right-handed alpha
Helix 2
AA2
A
89 102Right-handed alpha
Helix 3
AA3
A
103 106Right-handed 310
Helix 4
AA4
A
118 123Right-handed 310
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
149 159Right-handed alpha
Helix 7
AA7
A
182 196Right-handed alpha
Helix 8
AA8
A
211 232Right-handed alpha
Helix 9
AA9
A
254 258Right-handed 310
Helix 10
AB1
A
327 339Right-handed alpha
Helix 11
AB2
A
366 374Right-handed alpha
Helix 12
AB3
A
382 391Right-handed alpha
Helix 13
AB4
A
395 405Right-handed alpha
Helix 14
AB5
A
410 420Right-handed alpha
Helix 15
AB6
A
426 434Right-handed alpha
Helix 16
AB7
A
440 448Right-handed alpha
Helix 17
AB8
A
489 496Right-handed alpha
Helix 18
AB9
A
533 535Right-handed 310
Helix 19
AC1
A
536 553Right-handed alpha
Helix 20
AC2
A
575 585Right-handed alpha
Helix 21
AC3
A
604 612Right-handed alpha
Helix 22
AC4
A
612 624Right-handed alpha
Helix 23
AC5
A
635 651Right-handed alpha
Helix 24
AC6
A
655 669Right-handed alpha
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There are 6 sheets in PDB entry 9EF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
80 84parallel
Strand 3
A
132 137parallel
Strand 4
A
167 174parallel
Strand 5
A
198 199parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
80 84parallel
Strand 3
A
132 137parallel
Strand 4
A
167 174parallel
Strand 5
A
204 207parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
348 350anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
319 322anti-parallel
Strand 3
A
508 514anti-parallel
Strand 4
A
282 291anti-parallel
Strand 5
A
300 306anti-parallel
Strand 6
A
468 474anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 479first strand
Strand 2
A
485 487anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 595first strand
Strand 2
A
560 566parallel
Strand 3
A
528 531parallel
Strand 4
A
626 629parallel
Strand 5
A
672 674parallel
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