Analysis of interatomic Contacts of Structural Units in PDB entry:
9EFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EFB entry

There are 2 chains in PDB entry 9EFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4VAL 354
B
 GLU 4VAL 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 9EFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
57 59Right-handed 310
Helix 4
AA4
A
60 67Right-handed alpha
Helix 5
AA5
A
68 71Right-handed 310
Helix 6
AA6
A
79 93Right-handed alpha
Helix 7
AA7
A
109 111Right-handed 310
Helix 8
AA8
A
112 121Right-handed alpha
Helix 9
AA9
A
132 136Right-handed 310
Helix 10
AB1
A
137 142Right-handed alpha
Helix 11
AB2
A
144 158Right-handed alpha
Helix 12
AB3
A
182 200Right-handed alpha
Helix 13
AB4
A
212 224Right-handed alpha
Helix 14
AB5
A
227 229Right-handed 310
Helix 15
AB6
A
235 239Right-handed 310
Helix 16
AB7
A
242 252Right-handed alpha
Helix 17
AB8
A
278 292Right-handed alpha
Helix 18
AB9
A
294 296Right-handed 310
Helix 19
AC1
A
306 314Right-handed 310
Helix 20
AC2
A
319 324Right-handed alpha
Helix 21
AC3
A
324 331Right-handed alpha
Helix 22
AC4
A
335 344Right-handed alpha
Helix 23
AC5
A
344 352Right-handed alpha
Helix 24
AC6
B
17 21Right-handed 310
Helix 25
AC7
B
35 38Right-handed 310
Helix 26
AC8
B
57 59Right-handed 310
Helix 27
AC9
B
60 67Right-handed alpha
Helix 28
AD1
B
68 71Right-handed 310
Helix 29
AD2
B
79 93Right-handed alpha
Helix 30
AD3
B
109 111Right-handed 310
Helix 31
AD4
B
112 121Right-handed alpha
Helix 32
AD5
B
132 136Right-handed 310
Helix 33
AD6
B
137 142Right-handed alpha
Helix 34
AD7
B
144 158Right-handed alpha
Helix 35
AD8
B
182 200Right-handed alpha
Helix 36
AD9
B
212 225Right-handed alpha
Helix 37
AE1
B
235 239Right-handed 310
Helix 38
AE2
B
242 251Right-handed alpha
Helix 39
AE3
B
278 292Right-handed alpha
Helix 40
AE4
B
294 296Right-handed 310
Helix 41
AE5
B
306 314Right-handed 310
Helix 42
AE6
B
316 318Right-handed 310
Helix 43
AE7
B
319 324Right-handed alpha
Helix 44
AE8
B
324 331Right-handed alpha
Helix 45
AE9
B
335 344Right-handed alpha
Helix 46
AF1
B
344 352Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9EFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 16anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 28first strand
Strand 2
A
95 100parallel
Strand 3
A
123 128parallel
Strand 4
A
171 176parallel
Strand 5
A
203 206parallel
Strand 6
A
231 233parallel
Strand 7
A
255 258parallel
Strand 8
A
298 300parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
76 77anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
14 16anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 28first strand
Strand 2
B
95 100parallel
Strand 3
B
123 128parallel
Strand 4
B
171 176parallel
Strand 5
B
203 206parallel
Strand 6
B
231 233parallel
Strand 7
B
255 258parallel
Strand 8
B
298 300parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
76 77anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il