Analysis of interatomic Contacts of Structural Units in PDB entry:
9EFG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EFG entry

There are 4 chains in PDB entry 9EFG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 98	GLU 797
B	LEU 98	GLU 797
C	LEU 98	GLU 797
D	LEU 98	GLU 797

There are 40 helices in PDB entry 9EFG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	99	181	Right-handed alpha
Helix 2	AA2	A	210	222	Right-handed alpha
Helix 3	AA3	A	227	241	Right-handed alpha
Helix 4	AA4	A	248	259	Right-handed alpha
Helix 5	AA5	A	267	297	Right-handed alpha
Helix 6	AA6	A	304	323	Right-handed alpha
Helix 7	AA7	A	324	327	Right-handed 310
Helix 8	AA8	A	396	402	Right-handed alpha
Helix 9	AA9	A	514	523	Right-handed alpha
Helix 10	AB1	A	616	620	Right-handed 310
Helix 11	AB2	B	99	181	Right-handed alpha
Helix 12	AB3	B	210	222	Right-handed alpha
Helix 13	AB4	B	227	241	Right-handed alpha
Helix 14	AB5	B	248	259	Right-handed alpha
Helix 15	AB6	B	267	297	Right-handed alpha
Helix 16	AB7	B	304	323	Right-handed alpha
Helix 17	AB8	B	324	327	Right-handed 310
Helix 18	AB9	B	396	402	Right-handed alpha
Helix 19	AC1	B	514	523	Right-handed alpha
Helix 20	AC2	B	616	620	Right-handed 310
Helix 21	AC3	C	99	181	Right-handed alpha
Helix 22	AC4	C	210	222	Right-handed alpha
Helix 23	AC5	C	227	241	Right-handed alpha
Helix 24	AC6	C	248	259	Right-handed alpha
Helix 25	AC7	C	267	297	Right-handed alpha
Helix 26	AC8	C	304	323	Right-handed alpha
Helix 27	AC9	C	324	327	Right-handed 310
Helix 28	AD1	C	396	402	Right-handed alpha
Helix 29	AD2	C	514	523	Right-handed alpha
Helix 30	AD3	C	616	620	Right-handed 310
Helix 31	AD4	D	99	181	Right-handed alpha
Helix 32	AD5	D	210	222	Right-handed alpha
Helix 33	AD6	D	227	241	Right-handed alpha
Helix 34	AD7	D	248	259	Right-handed alpha
Helix 35	AD8	D	267	297	Right-handed alpha
Helix 36	AD9	D	304	323	Right-handed alpha
Helix 37	AE1	D	324	327	Right-handed 310
Helix 38	AE2	D	396	402	Right-handed alpha
Helix 39	AE3	D	514	523	Right-handed alpha
Helix 40	AE4	D	616	620	Right-handed 310

There are 56 sheets in PDB entry 9EFG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	331	first strand
Strand 2	A	511	513	anti-parallel
Strand 3	A	493	496	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	479	482	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	421	430	anti-parallel
Strand 3	A	434	444	anti-parallel
Strand 4	A	451	460	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	421	430	anti-parallel
Strand 3	A	434	444	anti-parallel
Strand 4	A	409	410	parallel
Strand 5	A	468	469	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	362	first strand
Strand 2	A	372	376	anti-parallel
Strand 3	A	390	392	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	506	508	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	558	first strand
Strand 2	A	584	588	anti-parallel
Strand 3	A	650	655	anti-parallel
Strand 4	A	609	610	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	558	first strand
Strand 2	A	584	588	anti-parallel
Strand 3	A	650	655	anti-parallel
Strand 4	A	613	614	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	576	579	anti-parallel
Strand 3	A	661	664	anti-parallel
Strand 4	A	604	607	anti-parallel
Strand 5	A	634	635	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	600	first strand
Strand 2	A	639	641	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	A	710	712	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	757	759	first strand
Strand 2	A	723	729	anti-parallel
Strand 3	A	762	763	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	757	759	first strand
Strand 2	A	723	729	anti-parallel
Strand 3	A	787	794	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	736	first strand
Strand 2	A	776	778	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	511	513	anti-parallel
Strand 3	B	493	496	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	338	first strand
Strand 2	B	479	482	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	421	430	anti-parallel
Strand 3	B	434	444	anti-parallel
Strand 4	B	451	460	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	421	430	anti-parallel
Strand 3	B	434	444	anti-parallel
Strand 4	B	409	410	parallel
Strand 5	B	468	469	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	362	first strand
Strand 2	B	372	376	anti-parallel
Strand 3	B	390	392	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	501	first strand
Strand 2	B	506	508	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	558	first strand
Strand 2	B	584	588	anti-parallel
Strand 3	B	650	655	anti-parallel
Strand 4	B	609	610	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	558	first strand
Strand 2	B	584	588	anti-parallel
Strand 3	B	650	655	anti-parallel
Strand 4	B	613	614	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	566	first strand
Strand 2	B	576	579	anti-parallel
Strand 3	B	661	664	anti-parallel
Strand 4	B	604	607	anti-parallel
Strand 5	B	634	635	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	600	first strand
Strand 2	B	639	641	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	691	first strand
Strand 2	B	710	712	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	757	759	first strand
Strand 2	B	723	729	anti-parallel
Strand 3	B	762	763	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	757	759	first strand
Strand 2	B	723	729	anti-parallel
Strand 3	B	787	794	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	776	778	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	331	first strand
Strand 2	C	511	513	anti-parallel
Strand 3	C	493	496	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	338	first strand
Strand 2	C	479	482	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	350	first strand
Strand 2	C	421	430	anti-parallel
Strand 3	C	434	444	anti-parallel
Strand 4	C	451	460	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	350	first strand
Strand 2	C	421	430	anti-parallel
Strand 3	C	434	444	anti-parallel
Strand 4	C	409	410	parallel
Strand 5	C	468	469	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	362	first strand
Strand 2	C	372	376	anti-parallel
Strand 3	C	390	392	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	501	first strand
Strand 2	C	506	508	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	558	first strand
Strand 2	C	584	588	anti-parallel
Strand 3	C	650	655	anti-parallel
Strand 4	C	609	610	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	558	first strand
Strand 2	C	584	588	anti-parallel
Strand 3	C	650	655	anti-parallel
Strand 4	C	613	614	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	566	first strand
Strand 2	C	576	579	anti-parallel
Strand 3	C	661	664	anti-parallel
Strand 4	C	604	607	anti-parallel
Strand 5	C	634	635	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	600	first strand
Strand 2	C	639	641	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	689	691	first strand
Strand 2	C	710	712	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	759	first strand
Strand 2	C	723	729	anti-parallel
Strand 3	C	762	763	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	759	first strand
Strand 2	C	723	729	anti-parallel
Strand 3	C	787	794	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	776	778	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	331	first strand
Strand 2	D	511	513	anti-parallel
Strand 3	D	493	496	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	338	first strand
Strand 2	D	479	482	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	421	430	anti-parallel
Strand 3	D	434	444	anti-parallel
Strand 4	D	451	460	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	421	430	anti-parallel
Strand 3	D	434	444	anti-parallel
Strand 4	D	409	410	parallel
Strand 5	D	468	469	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	362	first strand
Strand 2	D	372	376	anti-parallel
Strand 3	D	390	392	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	499	501	first strand
Strand 2	D	506	508	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	557	558	first strand
Strand 2	D	584	588	anti-parallel
Strand 3	D	650	655	anti-parallel
Strand 4	D	609	610	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	557	558	first strand
Strand 2	D	584	588	anti-parallel
Strand 3	D	650	655	anti-parallel
Strand 4	D	613	614	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	566	first strand
Strand 2	D	576	579	anti-parallel
Strand 3	D	661	664	anti-parallel
Strand 4	D	604	607	anti-parallel
Strand 5	D	634	635	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	598	600	first strand
Strand 2	D	639	641	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	689	691	first strand
Strand 2	D	710	712	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	757	759	first strand
Strand 2	D	723	729	anti-parallel
Strand 3	D	762	763	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	757	759	first strand
Strand 2	D	723	729	anti-parallel
Strand 3	D	787	794	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	734	736	first strand
Strand 2	D	776	778	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EFG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EFG