Analysis of interatomic Contacts of Structural Units in PDB entry:
9EFS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EFS entry

There are 3 chains in PDB entry 9EFS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 91	THR 814
B	ALA 91	THR 814
C	ALA 91	THR 814

There are 58 helices in PDB entry 9EFS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	105	Right-handed alpha
Helix 2	AA2	A	193	200	Right-handed alpha
Helix 3	AA3	A	225	227	Right-handed 310
Helix 4	AA4	A	260	265	Right-handed alpha
Helix 5	AA5	A	306	310	Right-handed 310
Helix 6	AA6	A	315	317	Right-handed 310
Helix 7	AA7	A	403	409	Right-handed alpha
Helix 8	AA8	A	413	428	Right-handed alpha
Helix 9	AA9	A	458	468	Right-handed alpha
Helix 10	AB1	A	510	546	Right-handed alpha
Helix 11	AB2	A	546	556	Right-handed alpha
Helix 12	AB3	A	577	579	Right-handed 310
Helix 13	AB4	A	669	675	Right-handed alpha
Helix 14	AB5	A	686	691	Right-handed alpha
Helix 15	AB6	A	701	724	Right-handed alpha
Helix 16	AB7	A	726	739	Right-handed alpha
Helix 17	AB8	A	747	773	Right-handed alpha
Helix 18	AB9	A	773	803	Right-handed alpha
Helix 19	AC1	A	804	810	Right-handed alpha
Helix 20	AC2	B	92	105	Right-handed alpha
Helix 21	AC3	B	193	200	Right-handed alpha
Helix 22	AC4	B	225	227	Right-handed 310
Helix 23	AC5	B	260	265	Right-handed alpha
Helix 24	AC6	B	306	310	Right-handed 310
Helix 25	AC7	B	315	317	Right-handed 310
Helix 26	AC8	B	403	408	Right-handed alpha
Helix 27	AC9	B	411	428	Right-handed alpha
Helix 28	AD1	B	458	468	Right-handed alpha
Helix 29	AD2	B	510	546	Right-handed alpha
Helix 30	AD3	B	546	556	Right-handed alpha
Helix 31	AD4	B	577	579	Right-handed 310
Helix 32	AD5	B	669	675	Right-handed alpha
Helix 33	AD6	B	686	691	Right-handed alpha
Helix 34	AD7	B	701	724	Right-handed alpha
Helix 35	AD8	B	726	739	Right-handed alpha
Helix 36	AD9	B	747	773	Right-handed alpha
Helix 37	AE1	B	773	803	Right-handed alpha
Helix 38	AE2	B	804	810	Right-handed alpha
Helix 39	AE3	C	92	105	Right-handed alpha
Helix 40	AE4	C	179	183	Right-handed 310
Helix 41	AE5	C	193	205	Right-handed alpha
Helix 42	AE6	C	225	227	Right-handed 310
Helix 43	AE7	C	260	265	Right-handed alpha
Helix 44	AE8	C	306	310	Right-handed 310
Helix 45	AE9	C	315	317	Right-handed 310
Helix 46	AF1	C	403	408	Right-handed alpha
Helix 47	AF2	C	411	428	Right-handed alpha
Helix 48	AF3	C	458	468	Right-handed alpha
Helix 49	AF4	C	510	546	Right-handed alpha
Helix 50	AF5	C	546	556	Right-handed alpha
Helix 51	AF6	C	577	579	Right-handed 310
Helix 52	AF7	C	670	675	Right-handed alpha
Helix 53	AF8	C	686	691	Right-handed alpha
Helix 54	AF9	C	701	724	Right-handed alpha
Helix 55	AG1	C	726	739	Right-handed alpha
Helix 56	AG2	C	747	773	Right-handed alpha
Helix 57	AG3	C	773	803	Right-handed alpha
Helix 58	AG4	C	804	810	Right-handed alpha

There are 33 sheets in PDB entry 9EFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	574	576	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	563	first strand
Strand 2	A	568	572	anti-parallel
Strand 3	A	124	126	anti-parallel
Strand 4	B	665	666	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	152	first strand
Strand 2	A	366	379	anti-parallel
Strand 3	A	383	387	anti-parallel
Strand 4	A	395	398	anti-parallel
Strand 5	A	440	444	anti-parallel
Strand 6	A	448	453	anti-parallel
Strand 7	A	143	152	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	157	170	anti-parallel
Strand 3	A	267	280	anti-parallel
Strand 4	A	287	289	anti-parallel
Strand 5	A	294	295	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	245	248	anti-parallel
Strand 3	A	267	280	anti-parallel
Strand 4	A	157	170	anti-parallel
Strand 5	A	351	355	anti-parallel
Strand 6	A	342	346	anti-parallel
Strand 7	A	319	322	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	231	233	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	215	first strand
Strand 2	A	218	223	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	435	first strand
Strand 2	A	455	457	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	583	first strand
Strand 2	A	601	604	anti-parallel
Strand 3	A	613	617	anti-parallel
Strand 4	A	623	624	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	630	632	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	643	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	654	658	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	666	first strand
Strand 2	C	124	126	parallel
Strand 3	C	568	572	anti-parallel
Strand 4	C	559	563	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	574	576	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	563	first strand
Strand 2	B	568	572	anti-parallel
Strand 3	B	124	126	anti-parallel
Strand 4	C	665	666	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	152	first strand
Strand 2	B	366	380	anti-parallel
Strand 3	B	383	387	anti-parallel
Strand 4	B	395	398	anti-parallel
Strand 5	B	440	444	anti-parallel
Strand 6	B	448	453	anti-parallel
Strand 7	B	143	152	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	157	170	anti-parallel
Strand 3	B	267	280	anti-parallel
Strand 4	B	287	289	anti-parallel
Strand 5	B	294	295	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	245	248	anti-parallel
Strand 3	B	267	280	anti-parallel
Strand 4	B	157	170	anti-parallel
Strand 5	B	351	355	anti-parallel
Strand 6	B	342	346	anti-parallel
Strand 7	B	319	322	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	231	233	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	218	223	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	455	457	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	583	first strand
Strand 2	B	601	604	anti-parallel
Strand 3	B	613	617	anti-parallel
Strand 4	B	623	624	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	597	first strand
Strand 2	B	630	632	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	643	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	654	658	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	574	576	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	152	first strand
Strand 2	C	366	379	anti-parallel
Strand 3	C	383	387	anti-parallel
Strand 4	C	395	398	anti-parallel
Strand 5	C	440	444	anti-parallel
Strand 6	C	448	453	anti-parallel
Strand 7	C	144	152	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	191	first strand
Strand 2	C	157	170	anti-parallel
Strand 3	C	267	280	anti-parallel
Strand 4	C	287	289	anti-parallel
Strand 5	C	294	295	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	267	280	anti-parallel
Strand 4	C	157	170	anti-parallel
Strand 5	C	351	355	anti-parallel
Strand 6	C	342	346	anti-parallel
Strand 7	C	319	322	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	231	233	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	215	first strand
Strand 2	C	218	223	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	435	first strand
Strand 2	C	455	457	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	581	583	first strand
Strand 2	C	601	604	anti-parallel
Strand 3	C	613	617	anti-parallel
Strand 4	C	623	624	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	597	first strand
Strand 2	C	630	632	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	643	first strand
Strand 2	C	646	651	anti-parallel
Strand 3	C	654	658	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EFS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EFS