Analysis of interatomic Contacts of Structural Units in PDB entry:
9EFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EFV entry

There are 11 chains in PDB entry 9EFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 37	LYS 467
B	ASN 29	ALA 443
C	SER 3	SER 407
D	LYS 20	ALA 405
E	SER 24	ILE 333
F	GLY 37	GLN 316
G	ASN 10	ALA 222
H	PHE 11	ASN 209
I	MET 1	GLY 76
J	ALA 359	ALA 776
K	LYS 19	TYR 106

There are156 helices in PDB entry 9EFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	49	Right-handed alpha
Helix 2	AA2	A	54	64	Right-handed alpha
Helix 3	AA3	A	70	79	Right-handed alpha
Helix 4	AA4	A	83	87	Right-handed 310
Helix 5	AA5	A	90	102	Right-handed alpha
Helix 6	AA6	A	130	139	Right-handed alpha
Helix 7	AA7	A	140	145	Right-handed alpha
Helix 8	AA8	A	146	156	Right-handed alpha
Helix 9	AA9	A	157	176	Right-handed alpha
Helix 10	AB1	A	177	189	Right-handed alpha
Helix 11	AB2	A	194	212	Right-handed alpha
Helix 12	AB3	A	215	228	Right-handed alpha
Helix 13	AB4	A	229	234	Right-handed alpha
Helix 14	AB5	A	244	260	Right-handed alpha
Helix 15	AB6	A	262	272	Right-handed alpha
Helix 16	AB7	A	274	278	Right-handed 310
Helix 17	AB8	A	288	301	Right-handed alpha
Helix 18	AB9	A	302	310	Right-handed alpha
Helix 19	AC1	A	313	323	Right-handed alpha
Helix 20	AC2	A	323	335	Right-handed alpha
Helix 21	AC3	A	337	353	Right-handed alpha
Helix 22	AC4	A	361	379	Right-handed alpha
Helix 23	AC5	A	386	393	Right-handed alpha
Helix 24	AC6	A	396	410	Right-handed alpha
Helix 25	AC7	A	430	462	Right-handed alpha
Helix 26	AC8	B	30	42	Right-handed alpha
Helix 27	AC9	B	49	61	Right-handed alpha
Helix 28	AD1	B	66	80	Right-handed alpha
Helix 29	AD2	B	84	93	Right-handed alpha
Helix 30	AD3	B	96	102	Right-handed alpha
Helix 31	AD4	B	104	119	Right-handed alpha
Helix 32	AD5	B	120	123	Right-handed 310
Helix 33	AD6	B	124	143	Right-handed alpha
Helix 34	AD7	B	146	162	Right-handed alpha
Helix 35	AD8	B	167	177	Right-handed alpha
Helix 36	AD9	B	190	208	Right-handed alpha
Helix 37	AE1	B	211	223	Right-handed alpha
Helix 38	AE2	B	232	235	Right-handed 310
Helix 39	AE3	B	236	249	Right-handed alpha
Helix 40	AE4	B	250	268	Right-handed alpha
Helix 41	AE5	B	272	287	Right-handed alpha
Helix 42	AE6	B	292	296	Right-handed 310
Helix 43	AE7	B	308	319	Right-handed alpha
Helix 44	AE8	B	322	333	Right-handed alpha
Helix 45	AE9	B	340	345	Right-handed alpha
Helix 46	AF1	B	346	348	Right-handed 310
Helix 47	AF2	B	352	363	Right-handed alpha
Helix 48	AF3	B	371	379	Right-handed alpha
Helix 49	AF4	B	381	395	Right-handed alpha
Helix 50	AF5	B	418	440	Right-handed alpha
Helix 51	AF6	C	4	19	Right-handed alpha
Helix 52	AF7	C	21	30	Right-handed alpha
Helix 53	AF8	C	31	37	Right-handed alpha
Helix 54	AF9	C	54	67	Right-handed alpha
Helix 55	AG1	C	74	87	Right-handed alpha
Helix 56	AG2	C	92	95	Right-handed 310
Helix 57	AG3	C	96	114	Right-handed alpha
Helix 58	AG4	C	120	130	Right-handed alpha
Helix 59	AG5	C	140	152	Right-handed alpha
Helix 60	AG6	C	158	162	Right-handed 310
Helix 61	AG7	C	171	175	Right-handed 310
Helix 62	AG8	C	177	195	Right-handed alpha
Helix 63	AG9	C	197	210	Right-handed alpha
Helix 64	AH1	C	217	235	Right-handed alpha
Helix 65	AH2	C	252	257	Right-handed alpha
Helix 66	AH3	C	258	269	Right-handed alpha
Helix 67	AH4	C	271	282	Right-handed alpha
Helix 68	AH5	C	282	289	Right-handed alpha
Helix 69	AH6	C	293	311	Right-handed alpha
Helix 70	AH7	C	319	326	Right-handed alpha
Helix 71	AH8	C	330	344	Right-handed alpha
Helix 72	AH9	C	369	399	Right-handed alpha
Helix 73	AI1	D	21	34	Right-handed alpha
Helix 74	AI2	D	39	54	Right-handed alpha
Helix 75	AI3	D	62	72	Right-handed alpha
Helix 76	AI4	D	73	76	Right-handed 310
Helix 77	AI5	D	77	93	Right-handed alpha
Helix 78	AI6	D	94	96	Right-handed 310
Helix 79	AI7	D	99	117	Right-handed alpha
Helix 80	AI8	D	119	129	Right-handed alpha
Helix 81	AI9	D	140	158	Right-handed alpha
Helix 82	AJ1	D	160	176	Right-handed alpha
Helix 83	AJ2	D	180	198	Right-handed alpha
Helix 84	AJ3	D	200	213	Right-handed alpha
Helix 85	AJ4	D	218	236	Right-handed alpha
Helix 86	AJ5	D	239	252	Right-handed alpha
Helix 87	AJ6	D	253	258	Right-handed 310
Helix 88	AJ7	D	260	269	Right-handed alpha
Helix 89	AJ8	D	274	278	Right-handed 310
Helix 90	AJ9	D	280	285	Right-handed alpha
Helix 91	AK1	D	286	291	Right-handed 310
Helix 92	AK2	D	299	316	Right-handed alpha
Helix 93	AK3	D	321	328	Right-handed alpha
Helix 94	AK4	D	334	343	Right-handed alpha
Helix 95	AK5	D	366	392	Right-handed alpha
Helix 96	AK6	D	392	405	Right-handed alpha
Helix 97	AK7	E	32	43	Right-handed alpha
Helix 98	AK8	E	58	71	Right-handed alpha
Helix 99	AK9	E	114	122	Right-handed alpha
Helix 100	AL1	E	122	127	Right-handed alpha
Helix 101	AL2	E	148	162	Right-handed alpha
Helix 102	AL3	E	171	179	Right-handed alpha
Helix 103	AL4	E	210	217	Right-handed alpha
Helix 104	AL5	E	233	239	Right-handed alpha
Helix 105	AL6	E	239	244	Right-handed alpha
Helix 106	AL7	E	258	281	Right-handed alpha
Helix 107	AL8	E	299	329	Right-handed alpha
Helix 108	AL9	F	44	63	Right-handed alpha
Helix 109	AM1	F	101	116	Right-handed alpha
Helix 110	AM2	F	132	144	Right-handed alpha
Helix 111	AM3	F	193	204	Right-handed alpha
Helix 112	AM4	F	215	248	Right-handed alpha
Helix 113	AM5	F	255	266	Right-handed alpha
Helix 114	AM6	F	272	311	Right-handed alpha
Helix 115	AM7	G	11	19	Right-handed alpha
Helix 116	AM8	G	24	37	Right-handed alpha
Helix 117	AM9	G	49	54	Right-handed alpha
Helix 118	AN1	G	55	57	Right-handed 310
Helix 119	AN2	G	60	72	Right-handed alpha
Helix 120	AN3	G	74	81	Right-handed alpha
Helix 121	AN4	G	89	108	Right-handed alpha
Helix 122	AN5	G	113	121	Right-handed alpha
Helix 123	AN6	G	124	138	Right-handed alpha
Helix 124	AN7	G	166	221	Right-handed alpha
Helix 125	AN8	H	12	26	Right-handed alpha
Helix 126	AN9	H	33	47	Right-handed alpha
Helix 127	AO1	H	49	60	Right-handed alpha
Helix 128	AO2	H	61	68	Right-handed alpha
Helix 129	AO3	H	68	83	Right-handed alpha
Helix 130	AO4	H	85	96	Right-handed alpha
Helix 131	AO5	H	102	124	Right-handed alpha
Helix 132	AO6	H	130	138	Right-handed alpha
Helix 133	AO7	H	140	151	Right-handed alpha
Helix 134	AO8	H	196	208	Right-handed alpha
Helix 135	AO9	I	22	34	Right-handed alpha
Helix 136	AP1	I	37	39	Right-handed 310
Helix 137	AP2	J	363	385	Right-handed alpha
Helix 138	AP3	J	388	405	Right-handed alpha
Helix 139	AP4	J	406	410	Right-handed 310
Helix 140	AP5	J	417	419	Right-handed 310
Helix 141	AP6	J	420	431	Right-handed alpha
Helix 142	AP7	J	441	454	Right-handed alpha
Helix 143	AP8	J	458	476	Right-handed alpha
Helix 144	AP9	J	481	496	Right-handed alpha
Helix 145	AQ1	J	501	527	Right-handed alpha
Helix 146	AQ2	J	559	573	Right-handed alpha
Helix 147	AQ3	J	582	585	Right-handed 310
Helix 148	AQ4	J	605	613	Right-handed alpha
Helix 149	AQ5	J	614	616	Right-handed 310
Helix 150	AQ6	J	622	630	Right-handed alpha
Helix 151	AQ7	J	632	646	Right-handed alpha
Helix 152	AQ8	J	709	722	Right-handed alpha
Helix 153	AQ9	J	726	734	Right-handed alpha
Helix 154	AR1	J	745	759	Right-handed alpha
Helix 155	AR2	K	54	59	Right-handed alpha
Helix 156	AR3	K	81	91	Right-handed alpha

There are 10 sheets in PDB entry 9EFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	418	first strand
Strand 2	A	423	426	anti-parallel
Strand 3	A	381	385	anti-parallel
Strand 4	B	400	403	parallel
Strand 5	B	408	411	anti-parallel
Strand 6	B	366	370	anti-parallel
Strand 7	D	351	353	parallel
Strand 8	D	358	360	anti-parallel
Strand 9	D	318	320	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	318	first strand
Strand 2	C	357	360	anti-parallel
Strand 3	C	349	352	anti-parallel
Strand 4	H	125	129	parallel
Strand 5	H	161	163	anti-parallel
Strand 6	H	154	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	168	first strand
Strand 2	E	135	138	parallel
Strand 3	E	78	86	anti-parallel
Strand 4	E	89	97	anti-parallel
Strand 5	E	54	56	parallel
Strand 6	E	225	226	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	87	first strand
Strand 2	F	71	74	anti-parallel
Strand 3	F	120	121	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	127	first strand
Strand 2	F	150	154	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	112	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	141	146	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	16	first strand
Strand 2	I	2	7	anti-parallel
Strand 3	I	66	71	parallel
Strand 4	I	41	45	anti-parallel
Strand 5	I	48	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	534	538	first strand
Strand 2	K	24	30	parallel
Strand 3	J	587	592	anti-parallel
Strand 4	J	599	604	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	619	621	first strand
Strand 2	J	668	671	anti-parallel
Strand 3	J	649	650	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	70	71	first strand
Strand 2	K	79	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EFV