Analysis of interatomic Contacts of Structural Units in PDB entry:
9EG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EG8 entry

There are 11 chains in PDB entry 9EG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	LEU 15	ILE 333
I	MET 1	GLY 76
J	ILE 409	ALA 759
A	VAL 37	LYS 467
B	ASN 29	ALA 443
C	SER 3	SER 407
D	MET 1	ALA 405
F	GLY 37	GLN 316
G	ASN 10	ALA 222
H	PHE 11	ASN 209
K	LYS 19	TYR 106

There are151 helices in PDB entry 9EG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	26	30	Right-handed 310
Helix 2	AA2	E	32	43	Right-handed alpha
Helix 3	AA3	E	59	72	Right-handed alpha
Helix 4	AA4	E	111	128	Right-handed alpha
Helix 5	AA5	E	148	162	Right-handed alpha
Helix 6	AA6	E	171	179	Right-handed alpha
Helix 7	AA7	E	208	213	Right-handed alpha
Helix 8	AA8	E	231	240	Right-handed alpha
Helix 9	AA9	E	245	251	Right-handed alpha
Helix 10	AB1	E	258	281	Right-handed alpha
Helix 11	AB2	E	299	329	Right-handed alpha
Helix 12	AB3	I	22	34	Right-handed alpha
Helix 13	AB4	I	37	41	Right-handed 310
Helix 14	AB5	J	410	418	Right-handed alpha
Helix 15	AB6	J	420	424	Right-handed 310
Helix 16	AB7	J	426	441	Right-handed alpha
Helix 17	AB8	J	445	463	Right-handed alpha
Helix 18	AB9	J	468	481	Right-handed alpha
Helix 19	AC1	J	484	489	Right-handed alpha
Helix 20	AC2	J	489	515	Right-handed alpha
Helix 21	AC3	J	544	562	Right-handed alpha
Helix 22	AC4	J	593	604	Right-handed alpha
Helix 23	AC5	J	609	618	Right-handed alpha
Helix 24	AC6	J	620	630	Right-handed alpha
Helix 25	AC7	J	633	637	Right-handed 310
Helix 26	AC8	J	670	674	Right-handed 310
Helix 27	AC9	J	690	704	Right-handed alpha
Helix 28	AD1	J	712	723	Right-handed alpha
Helix 29	AD2	J	728	742	Right-handed alpha
Helix 30	AD3	A	45	50	Right-handed alpha
Helix 31	AD4	A	53	65	Right-handed alpha
Helix 32	AD5	A	72	81	Right-handed alpha
Helix 33	AD6	A	88	102	Right-handed alpha
Helix 34	AD7	A	128	156	Right-handed alpha
Helix 35	AD8	A	157	174	Right-handed alpha
Helix 36	AD9	A	178	188	Right-handed alpha
Helix 37	AE1	A	189	191	Right-handed 310
Helix 38	AE2	A	194	212	Right-handed alpha
Helix 39	AE3	A	215	228	Right-handed alpha
Helix 40	AE4	A	229	234	Right-handed alpha
Helix 41	AE5	A	238	243	Right-handed alpha
Helix 42	AE6	A	244	260	Right-handed alpha
Helix 43	AE7	A	262	271	Right-handed alpha
Helix 44	AE8	A	274	278	Right-handed 310
Helix 45	AE9	A	285	301	Right-handed alpha
Helix 46	AF1	A	302	310	Right-handed alpha
Helix 47	AF2	A	314	323	Right-handed alpha
Helix 48	AF3	A	323	335	Right-handed alpha
Helix 49	AF4	A	338	355	Right-handed alpha
Helix 50	AF5	A	358	379	Right-handed alpha
Helix 51	AF6	A	386	393	Right-handed alpha
Helix 52	AF7	A	396	410	Right-handed alpha
Helix 53	AF8	A	430	463	Right-handed alpha
Helix 54	AF9	B	30	42	Right-handed alpha
Helix 55	AG1	B	49	60	Right-handed alpha
Helix 56	AG2	B	65	82	Right-handed alpha
Helix 57	AG3	B	84	99	Right-handed alpha
Helix 58	AG4	B	104	121	Right-handed alpha
Helix 59	AG5	B	124	142	Right-handed alpha
Helix 60	AG6	B	144	163	Right-handed alpha
Helix 61	AG7	B	165	180	Right-handed alpha
Helix 62	AG8	B	190	209	Right-handed alpha
Helix 63	AG9	B	210	222	Right-handed alpha
Helix 64	AH1	B	230	249	Right-handed alpha
Helix 65	AH2	B	251	268	Right-handed alpha
Helix 66	AH3	B	272	287	Right-handed alpha
Helix 67	AH4	B	292	296	Right-handed 310
Helix 68	AH5	B	299	305	Right-handed 310
Helix 69	AH6	B	308	319	Right-handed alpha
Helix 70	AH7	B	322	333	Right-handed alpha
Helix 71	AH8	B	352	363	Right-handed alpha
Helix 72	AH9	B	371	379	Right-handed alpha
Helix 73	AI1	B	381	395	Right-handed alpha
Helix 74	AI2	B	418	440	Right-handed alpha
Helix 75	AI3	C	4	18	Right-handed alpha
Helix 76	AI4	C	20	32	Right-handed alpha
Helix 77	AI5	C	45	51	Right-handed alpha
Helix 78	AI6	C	58	66	Right-handed alpha
Helix 79	AI7	C	74	87	Right-handed alpha
Helix 80	AI8	C	91	96	Right-handed 310
Helix 81	AI9	C	98	109	Right-handed alpha
Helix 82	AJ1	C	120	132	Right-handed alpha
Helix 83	AJ2	C	139	152	Right-handed alpha
Helix 84	AJ3	C	159	164	Right-handed alpha
Helix 85	AJ4	C	171	175	Right-handed 310
Helix 86	AJ5	C	177	195	Right-handed alpha
Helix 87	AJ6	C	197	210	Right-handed alpha
Helix 88	AJ7	C	217	235	Right-handed alpha
Helix 89	AJ8	C	252	257	Right-handed alpha
Helix 90	AJ9	C	258	269	Right-handed alpha
Helix 91	AK1	C	271	282	Right-handed alpha
Helix 92	AK2	C	282	289	Right-handed alpha
Helix 93	AK3	C	294	312	Right-handed alpha
Helix 94	AK4	C	319	326	Right-handed alpha
Helix 95	AK5	C	330	345	Right-handed alpha
Helix 96	AK6	C	369	398	Right-handed alpha
Helix 97	AK7	D	4	14	Right-handed alpha
Helix 98	AK8	D	19	35	Right-handed alpha
Helix 99	AK9	D	38	53	Right-handed alpha
Helix 100	AL1	D	58	73	Right-handed alpha
Helix 101	AL2	D	77	92	Right-handed alpha
Helix 102	AL3	D	93	96	Right-handed 310
Helix 103	AL4	D	99	117	Right-handed alpha
Helix 104	AL5	D	121	129	Right-handed alpha
Helix 105	AL6	D	140	157	Right-handed alpha
Helix 106	AL7	D	160	176	Right-handed alpha
Helix 107	AL8	D	181	198	Right-handed alpha
Helix 108	AL9	D	200	213	Right-handed alpha
Helix 109	AM1	D	218	236	Right-handed alpha
Helix 110	AM2	D	239	251	Right-handed alpha
Helix 111	AM3	D	252	256	Right-handed 310
Helix 112	AM4	D	260	269	Right-handed alpha
Helix 113	AM5	D	276	280	Right-handed 310
Helix 114	AM6	D	281	285	Right-handed 310
Helix 115	AM7	D	286	291	Right-handed 310
Helix 116	AM8	D	298	313	Right-handed alpha
Helix 117	AM9	D	321	329	Right-handed alpha
Helix 118	AN1	D	334	343	Right-handed alpha
Helix 119	AN2	D	366	392	Right-handed alpha
Helix 120	AN3	D	392	405	Right-handed alpha
Helix 121	AN4	F	46	63	Right-handed alpha
Helix 122	AN5	F	102	113	Right-handed alpha
Helix 123	AN6	F	132	143	Right-handed alpha
Helix 124	AN7	F	193	205	Right-handed alpha
Helix 125	AN8	F	215	248	Right-handed alpha
Helix 126	AN9	F	253	265	Right-handed alpha
Helix 127	AO1	F	272	313	Right-handed alpha
Helix 128	AO2	G	11	20	Right-handed alpha
Helix 129	AO3	G	24	37	Right-handed alpha
Helix 130	AO4	G	45	48	Right-handed 310
Helix 131	AO5	G	49	55	Right-handed alpha
Helix 132	AO6	G	60	72	Right-handed alpha
Helix 133	AO7	G	74	81	Right-handed alpha
Helix 134	AO8	G	89	108	Right-handed alpha
Helix 135	AO9	G	113	121	Right-handed alpha
Helix 136	AP1	G	124	138	Right-handed alpha
Helix 137	AP2	G	163	165	Right-handed 310
Helix 138	AP3	G	166	222	Right-handed alpha
Helix 139	AP4	H	12	26	Right-handed alpha
Helix 140	AP5	H	33	47	Right-handed alpha
Helix 141	AP6	H	49	60	Right-handed alpha
Helix 142	AP7	H	61	68	Right-handed alpha
Helix 143	AP8	H	68	83	Right-handed alpha
Helix 144	AP9	H	85	93	Right-handed alpha
Helix 145	AQ1	H	99	101	Right-handed 310
Helix 146	AQ2	H	102	124	Right-handed alpha
Helix 147	AQ3	H	130	138	Right-handed alpha
Helix 148	AQ4	H	140	152	Right-handed alpha
Helix 149	AQ5	H	196	209	Right-handed alpha
Helix 150	AQ6	K	54	60	Right-handed alpha
Helix 151	AQ7	K	81	91	Right-handed alpha

There are 11 sheets in PDB entry 9EG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	223	first strand
Strand 2	E	183	188	anti-parallel
Strand 3	E	167	170	anti-parallel
Strand 4	E	132	139	parallel
Strand 5	E	78	86	anti-parallel
Strand 6	E	89	97	anti-parallel
Strand 7	E	54	58	parallel
Strand 8	E	225	229	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	15	first strand
Strand 2	I	3	7	anti-parallel
Strand 3	I	66	70	parallel
Strand 4	I	42	45	anti-parallel
Strand 5	I	48	49	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	522	525	first strand
Strand 2	K	24	30	parallel
Strand 3	J	570	579	anti-parallel
Strand 4	J	588	592	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	528	529	first strand
Strand 2	K	32	33	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	710	711	first strand
Strand 2	J	754	755	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	358	360	anti-parallel
Strand 3	D	351	353	anti-parallel
Strand 4	B	366	370	parallel
Strand 5	B	408	411	anti-parallel
Strand 6	B	400	403	anti-parallel
Strand 7	A	381	385	parallel
Strand 8	A	423	426	anti-parallel
Strand 9	A	415	418	anti-parallel
Strand 10	C	314	318	parallel
Strand 11	C	357	359	anti-parallel
Strand 12	C	350	352	anti-parallel
Strand 13	H	125	129	parallel
Strand 14	H	161	162	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	43	first strand
Strand 2	F	80	88	parallel
Strand 3	F	70	77	anti-parallel
Strand 4	F	120	121	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	97	100	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	127	first strand
Strand 2	F	150	154	parallel
Strand 3	F	166	169	anti-parallel
Strand 4	F	184	186	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	112	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	141	146	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	73	first strand
Strand 2	K	103	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EG8