Analysis of interatomic Contacts of Structural Units in PDB entry:
9EGJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EGJ entry

There are 4 chains in PDB entry 9EGJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 232	LYS 506
B	GLU 233	LYS 506
C	LYS 234	LYS 506
D	GLU 233	LYS 506

There are 61 helices in PDB entry 9EGJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	244	262	Right-handed alpha
Helix 2	AA2	A	274	284	Right-handed alpha
Helix 3	AA3	A	294	300	Right-handed alpha
Helix 4	AA4	A	311	328	Right-handed alpha
Helix 5	AA5	A	347	354	Right-handed alpha
Helix 6	AA6	A	358	365	Right-handed 310
Helix 7	AA7	A	374	379	Right-handed alpha
Helix 8	AA8	A	382	391	Right-handed alpha
Helix 9	AA9	A	400	402	Right-handed 310
Helix 10	AB1	A	403	411	Right-handed alpha
Helix 11	AB2	A	423	428	Right-handed alpha
Helix 12	AB3	A	451	457	Right-handed alpha
Helix 13	AB4	A	458	465	Right-handed alpha
Helix 14	AB5	A	466	468	Right-handed 310
Helix 15	AB6	A	472	485	Right-handed alpha
Helix 16	AB7	A	489	501	Right-handed alpha
Helix 17	AB8	B	244	262	Right-handed alpha
Helix 18	AB9	B	274	284	Right-handed alpha
Helix 19	AC1	B	294	300	Right-handed alpha
Helix 20	AC2	B	311	328	Right-handed alpha
Helix 21	AC3	B	347	354	Right-handed alpha
Helix 22	AC4	B	358	365	Right-handed 310
Helix 23	AC5	B	374	379	Right-handed alpha
Helix 24	AC6	B	382	391	Right-handed alpha
Helix 25	AC7	B	400	410	Right-handed alpha
Helix 26	AC8	B	423	428	Right-handed alpha
Helix 27	AC9	B	451	457	Right-handed alpha
Helix 28	AD1	B	459	465	Right-handed alpha
Helix 29	AD2	B	466	468	Right-handed 310
Helix 30	AD3	B	472	485	Right-handed alpha
Helix 31	AD4	B	489	501	Right-handed alpha
Helix 32	AD5	C	244	262	Right-handed alpha
Helix 33	AD6	C	274	284	Right-handed alpha
Helix 34	AD7	C	294	300	Right-handed alpha
Helix 35	AD8	C	311	328	Right-handed alpha
Helix 36	AD9	C	347	354	Right-handed alpha
Helix 37	AE1	C	357	365	Right-handed 310
Helix 38	AE2	C	374	379	Right-handed alpha
Helix 39	AE3	C	382	391	Right-handed alpha
Helix 40	AE4	C	403	411	Right-handed alpha
Helix 41	AE5	C	423	428	Right-handed alpha
Helix 42	AE6	C	451	457	Right-handed alpha
Helix 43	AE7	C	458	465	Right-handed alpha
Helix 44	AE8	C	466	468	Right-handed 310
Helix 45	AE9	C	472	485	Right-handed alpha
Helix 46	AF1	C	489	501	Right-handed alpha
Helix 47	AF2	D	244	262	Right-handed alpha
Helix 48	AF3	D	274	284	Right-handed alpha
Helix 49	AF4	D	294	300	Right-handed alpha
Helix 50	AF5	D	311	328	Right-handed alpha
Helix 51	AF6	D	347	354	Right-handed alpha
Helix 52	AF7	D	357	365	Right-handed 310
Helix 53	AF8	D	374	379	Right-handed alpha
Helix 54	AF9	D	382	391	Right-handed alpha
Helix 55	AG1	D	400	410	Right-handed alpha
Helix 56	AG2	D	423	428	Right-handed alpha
Helix 57	AG3	D	451	457	Right-handed alpha
Helix 58	AG4	D	459	465	Right-handed alpha
Helix 59	AG5	D	466	468	Right-handed 310
Helix 60	AG6	D	472	485	Right-handed alpha
Helix 61	AG7	D	489	501	Right-handed alpha

There are 12 sheets in PDB entry 9EGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	240	first strand
Strand 2	A	265	269	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	445	450	anti-parallel
Strand 3	A	329	331	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	399	first strand
Strand 2	A	369	373	parallel
Strand 3	A	415	419	parallel
Strand 4	A	341	346	anti-parallel
Strand 5	A	430	432	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	265	269	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	293	first strand
Strand 2	B	445	450	anti-parallel
Strand 3	B	329	331	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	399	first strand
Strand 2	B	369	373	parallel
Strand 3	B	415	419	parallel
Strand 4	B	341	346	anti-parallel
Strand 5	B	430	432	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	240	first strand
Strand 2	C	265	269	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	293	first strand
Strand 2	C	445	450	anti-parallel
Strand 3	C	329	331	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	399	first strand
Strand 2	C	370	373	parallel
Strand 3	C	415	419	parallel
Strand 4	C	341	346	anti-parallel
Strand 5	C	430	432	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	240	first strand
Strand 2	D	265	269	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	293	first strand
Strand 2	D	445	450	anti-parallel
Strand 3	D	329	331	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	369	373	parallel
Strand 3	D	415	419	parallel
Strand 4	D	341	346	anti-parallel
Strand 5	D	430	432	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EGJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EGJ