Analysis of interatomic Contacts of Structural Units in PDB entry:
9EHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EHM entry

There are 16 chains in PDB entry 9EHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 33	VAL 505
B	ASN 33	VAL 505
C	VAL 36	VAL 505
D	LEU 520	ASP 664
E	LEU 520	ASP 664
F	LEU 520	ASP 664
H	VAL 2	SER 115
I	GLN 1	SER 115
K	SER 2	PRO 110
L	SER 2	PRO 110
M	GLN 1	SER 115
N	GLN 1	SER 115
O	GLN 1	SER 115
P	VAL 8	PRO 110
Q	VAL 8	PRO 110
R	VAL 8	PRO 110

There are 61 helices in PDB entry 9EHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	117	Right-handed alpha
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	177	179	Right-handed 310
Helix 4	AA4	A	335	350	Right-handed alpha
Helix 5	AA5	A	368	373	Right-handed alpha
Helix 6	AA6	A	425	429	Right-handed 310
Helix 7	AA7	A	475	481	Right-handed alpha
Helix 8	AA8	B	57	63	Right-handed 310
Helix 9	AA9	B	99	117	Right-handed alpha
Helix 10	AB1	B	122	126	Right-handed 310
Helix 11	AB2	B	177	179	Right-handed 310
Helix 12	AB3	B	335	353	Right-handed alpha
Helix 13	AB4	B	368	373	Right-handed alpha
Helix 14	AB5	B	425	429	Right-handed 310
Helix 15	AB6	B	475	481	Right-handed alpha
Helix 16	AB7	B	482	484	Right-handed 310
Helix 17	AB8	C	99	117	Right-handed alpha
Helix 18	AB9	C	122	126	Right-handed 310
Helix 19	AC1	C	177	179	Right-handed 310
Helix 20	AC2	C	335	350	Right-handed alpha
Helix 21	AC3	C	368	373	Right-handed alpha
Helix 22	AC4	C	425	429	Right-handed 310
Helix 23	AC5	C	475	481	Right-handed alpha
Helix 24	AC6	D	529	534	Right-handed alpha
Helix 25	AC7	D	536	543	Right-handed alpha
Helix 26	AC8	D	572	596	Right-handed alpha
Helix 27	AC9	D	619	624	Right-handed alpha
Helix 28	AD1	D	627	636	Right-handed alpha
Helix 29	AD2	D	638	652	Right-handed alpha
Helix 30	AD3	D	653	663	Right-handed alpha
Helix 31	AD4	E	529	534	Right-handed alpha
Helix 32	AD5	E	536	542	Right-handed alpha
Helix 33	AD6	E	543	545	Right-handed 310
Helix 34	AD7	E	572	596	Right-handed alpha
Helix 35	AD8	E	611	616	Right-handed alpha
Helix 36	AD9	E	618	624	Right-handed alpha
Helix 37	AE1	E	627	636	Right-handed alpha
Helix 38	AE2	E	638	664	Right-handed alpha
Helix 39	AE3	F	529	534	Right-handed alpha
Helix 40	AE4	F	536	543	Right-handed alpha
Helix 41	AE5	F	572	596	Right-handed alpha
Helix 42	AE6	F	619	624	Right-handed alpha
Helix 43	AE7	F	627	634	Right-handed alpha
Helix 44	AE8	F	638	652	Right-handed alpha
Helix 45	AE9	F	653	664	Right-handed alpha
Helix 46	AF1	H	28	32	Right-handed 310
Helix 47	AF2	H	61	64	Right-handed 310
Helix 48	AF3	H	83	87	Right-handed 310
Helix 49	AF4	H	100	100	Right-handed 310
Helix 50	AF5	I	61	64	Right-handed 310
Helix 51	AF6	I	83	87	Right-handed 310
Helix 52	AF7	I	100	100	Right-handed 310
Helix 53	AF8	K	79	83	Right-handed 310
Helix 54	AF9	L	79	83	Right-handed 310
Helix 55	AG1	M	83	87	Right-handed 310
Helix 56	AG2	N	60	64	Right-handed 310
Helix 57	AG3	O	60	64	Right-handed 310
Helix 58	AG4	O	83	87	Right-handed 310
Helix 59	AG5	O	100	100	Right-handed 310
Helix 60	AG6	P	79	83	Right-handed 310
Helix 61	AG7	Q	79	83	Right-handed 310

There are 54 sheets in PDB entry 9EHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	494	499	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	215	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	208	209	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	236	238	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	176	first strand
Strand 2	A	155	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	302	anti-parallel
Strand 3	A	330	334	anti-parallel
Strand 4	A	413	420	anti-parallel
Strand 5	A	382	385	anti-parallel
Strand 6	A	374	377	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	302	anti-parallel
Strand 3	A	441	456	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	394	395	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	316	320	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	40	first strand
Strand 2	B	494	499	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	486	491	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	84	85	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	53	56	parallel
Strand 3	B	217	218	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	236	239	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	176	first strand
Strand 2	B	155	162	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	190	193	anti-parallel
Strand 5	B	181	183	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	432	435	parallel
Strand 3	B	423	424	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	451	456	anti-parallel
Strand 3	B	283	287	anti-parallel
Strand 4	B	271	273	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	451	456	anti-parallel
Strand 3	B	465	470	anti-parallel
Strand 4	B	358	361	parallel
Strand 5	B	394	395	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	377	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	413	420	anti-parallel
Strand 4	B	330	334	anti-parallel
Strand 5	B	292	298	anti-parallel
Strand 6	B	443	449	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	312	first strand
Strand 2	B	315	320	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	494	497	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	84	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	236	238	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	176	first strand
Strand 2	C	155	162	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	184	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	377	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	413	420	anti-parallel
Strand 4	C	329	334	anti-parallel
Strand 5	C	284	302	anti-parallel
Strand 6	C	441	456	anti-parallel
Strand 7	C	465	470	anti-parallel
Strand 8	C	358	361	parallel
Strand 9	C	394	395	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	308	first strand
Strand 2	C	316	320	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	434	435	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	77	82	anti-parallel
Strand 3	H	67	72	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	17	23	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	52	anti-parallel
Strand 6	I	56	59	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	102	103	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	24	first strand
Strand 2	K	70	75	anti-parallel
Strand 3	K	62	67	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	48	first strand
Strand 2	K	34	38	anti-parallel
Strand 3	K	85	91	anti-parallel
Strand 4	K	96	98	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	102	104	parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	110	111	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	20	first strand
Strand 2	M	77	82	anti-parallel
Strand 3	M	67	72	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	51	first strand
Strand 2	M	33	39	anti-parallel
Strand 3	M	89	100	anti-parallel
Strand 4	M	100	100	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	110	111	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	23	first strand
Strand 2	N	77	82	anti-parallel
Strand 3	N	68	72	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	51	first strand
Strand 2	N	33	39	anti-parallel
Strand 3	N	89	100	anti-parallel
Strand 4	N	100	100	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	51	first strand
Strand 2	N	33	39	anti-parallel
Strand 3	N	89	100	anti-parallel
Strand 4	N	107	108	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	12	first strand
Strand 2	O	107	111	parallel
Strand 3	O	88	100	anti-parallel
Strand 4	O	33	39	anti-parallel
Strand 5	O	49	51	anti-parallel
Strand 6	O	57	58	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	12	first strand
Strand 2	O	107	111	parallel
Strand 3	O	88	100	anti-parallel
Strand 4	O	100	100	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	68	72	first strand
Strand 2	O	77	81	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	9	11	first strand
Strand 2	P	102	104	parallel
Strand 3	P	85	91	anti-parallel
Strand 4	P	32	38	anti-parallel
Strand 5	P	44	49	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	18	22	first strand
Strand 2	P	72	76	anti-parallel
Strand 3	P	62	63	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	14	first strand
Strand 2	Q	102	107	parallel
Strand 3	Q	85	90	anti-parallel
Strand 4	Q	33	38	anti-parallel
Strand 5	Q	45	48	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	18	22	first strand
Strand 2	Q	72	76	anti-parallel
Strand 3	Q	62	63	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	22	first strand
Strand 2	R	72	75	anti-parallel
Strand 3	R	62	63	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	32	38	first strand
Strand 2	R	85	91	anti-parallel
Strand 3	R	101	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EHM