Analysis of interatomic Contacts of Structural Units in PDB entry:
9EIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EIJ entry

There are 15 chains in PDB entry 9EIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	SER 130
E	PRO 11	ALA 294
F	CYS 13	ALA 294
I	LEU 77	GLY 361
J	LEU 77	GLY 361
K	GLU 15	LEU 48
L	MET 1	LEU 48
N	MET 1	GLY 55
P	ASP 26	ASP 64
R	GLU 57	GLN 115
T	ASP 68	ARG 117
V	ASP 26	LEU 67
X	SER 5	GLY 55
Z	GLU 15	LEU 48
B	LEU 63	LEU 581

There are 57 helices in PDB entry 9EIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	6	30	Right-handed alpha
Helix 2	AA2	D	33	53	Right-handed alpha
Helix 3	AA3	D	62	83	Right-handed alpha
Helix 4	AA4	D	85	100	Right-handed alpha
Helix 5	AA5	D	102	112	Right-handed alpha
Helix 6	AA6	D	115	126	Right-handed alpha
Helix 7	AA7	D	127	129	Right-handed 310
Helix 8	AA8	E	17	21	Right-handed 310
Helix 9	AA9	E	22	31	Right-handed alpha
Helix 10	AB1	E	156	158	Right-handed 310
Helix 11	AB2	E	278	282	Right-handed 310
Helix 12	AB3	F	17	21	Right-handed 310
Helix 13	AB4	F	22	31	Right-handed alpha
Helix 14	AB5	F	116	119	Right-handed 310
Helix 15	AB6	F	278	282	Right-handed 310
Helix 16	AB7	I	82	86	Right-handed 310
Helix 17	AB8	I	87	92	Right-handed alpha
Helix 18	AB9	J	84	92	Right-handed alpha
Helix 19	AC1	J	308	310	Right-handed 310
Helix 20	AC2	K	16	48	Right-handed alpha
Helix 21	AC3	L	14	46	Right-handed alpha
Helix 22	AC4	N	5	39	Right-handed alpha
Helix 23	AC5	N	48	54	Right-handed alpha
Helix 24	AC6	P	27	36	Right-handed alpha
Helix 25	AC7	P	40	62	Right-handed alpha
Helix 26	AC8	R	58	64	Right-handed alpha
Helix 27	AC9	R	66	96	Right-handed alpha
Helix 28	AD1	R	96	114	Right-handed alpha
Helix 29	AD2	T	69	96	Right-handed alpha
Helix 30	AD3	T	96	116	Right-handed alpha
Helix 31	AD4	V	27	36	Right-handed alpha
Helix 32	AD5	V	40	62	Right-handed alpha
Helix 33	AD6	X	6	39	Right-handed alpha
Helix 34	AD7	X	48	52	Right-handed 310
Helix 35	AD8	Z	16	46	Right-handed alpha
Helix 36	AD9	B	63	67	Right-handed 310
Helix 37	AE1	B	70	75	Right-handed 310
Helix 38	AE2	B	76	91	Right-handed alpha
Helix 39	AE3	B	107	136	Right-handed alpha
Helix 40	AE4	B	141	145	Right-handed 310
Helix 41	AE5	B	152	156	Right-handed 310
Helix 42	AE6	B	229	237	Right-handed alpha
Helix 43	AE7	B	247	251	Right-handed 310
Helix 44	AE8	B	325	332	Right-handed alpha
Helix 45	AE9	B	335	357	Right-handed alpha
Helix 46	AF1	B	384	388	Right-handed 310
Helix 47	AF2	B	415	420	Right-handed alpha
Helix 48	AF3	B	433	447	Right-handed alpha
Helix 49	AF4	B	456	460	Right-handed 310
Helix 50	AF5	B	467	471	Right-handed 310
Helix 51	AF6	B	479	490	Right-handed alpha
Helix 52	AF7	B	493	497	Right-handed 310
Helix 53	AF8	B	499	513	Right-handed alpha
Helix 54	AF9	B	513	518	Right-handed alpha
Helix 55	AG1	B	523	545	Right-handed alpha
Helix 56	AG2	B	549	561	Right-handed alpha
Helix 57	AG3	B	563	579	Right-handed alpha

There are 7 sheets in PDB entry 9EIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	45	first strand
Strand 2	E	51	59	anti-parallel
Strand 3	E	65	72	anti-parallel
Strand 4	E	80	87	anti-parallel
Strand 5	E	91	103	anti-parallel
Strand 6	E	106	114	anti-parallel
Strand 7	E	121	131	anti-parallel
Strand 8	E	134	141	anti-parallel
Strand 9	E	148	155	anti-parallel
Strand 10	E	160	169	anti-parallel
Strand 11	E	177	185	anti-parallel
Strand 12	E	189	196	anti-parallel
Strand 13	E	200	208	anti-parallel
Strand 14	E	213	221	anti-parallel
Strand 15	E	229	239	anti-parallel
Strand 16	E	242	249	anti-parallel
Strand 17	E	253	263	anti-parallel
Strand 18	E	266	275	anti-parallel
Strand 19	E	285	292	anti-parallel
Strand 20	E	37	45	parallel

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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	45	first strand
Strand 2	F	50	59	anti-parallel
Strand 3	F	65	74	anti-parallel
Strand 4	F	80	87	anti-parallel
Strand 5	F	91	98	anti-parallel
Strand 6	F	106	115	anti-parallel
Strand 7	F	120	131	anti-parallel
Strand 8	F	134	141	anti-parallel
Strand 9	F	148	155	anti-parallel
Strand 10	F	160	169	anti-parallel
Strand 11	F	174	185	anti-parallel
Strand 12	F	189	196	anti-parallel
Strand 13	F	200	207	anti-parallel
Strand 14	F	213	222	anti-parallel
Strand 15	F	228	239	anti-parallel
Strand 16	F	242	249	anti-parallel
Strand 17	F	253	263	anti-parallel
Strand 18	F	266	275	anti-parallel
Strand 19	F	285	292	anti-parallel
Strand 20	F	37	45	parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	110	first strand
Strand 2	I	113	121	anti-parallel
Strand 3	I	128	140	anti-parallel
Strand 4	I	146	155	anti-parallel
Strand 5	I	161	167	anti-parallel
Strand 6	I	173	181	anti-parallel
Strand 7	I	184	195	anti-parallel
Strand 8	I	199	206	anti-parallel
Strand 9	I	215	226	anti-parallel
Strand 10	I	229	240	anti-parallel
Strand 11	I	243	256	anti-parallel
Strand 12	I	259	266	anti-parallel
Strand 13	I	269	276	anti-parallel
Strand 14	I	282	291	anti-parallel
Strand 15	I	296	307	anti-parallel
Strand 16	I	312	319	anti-parallel
Strand 17	I	323	331	anti-parallel
Strand 18	I	338	346	anti-parallel
Strand 19	I	351	360	anti-parallel
Strand 20	I	100	110	parallel

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There are 20 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	110	first strand
Strand 2	J	113	121	anti-parallel
Strand 3	J	128	140	anti-parallel
Strand 4	J	146	155	anti-parallel
Strand 5	J	160	169	anti-parallel
Strand 6	J	172	181	anti-parallel
Strand 7	J	184	195	anti-parallel
Strand 8	J	199	206	anti-parallel
Strand 9	J	215	226	anti-parallel
Strand 10	J	229	240	anti-parallel
Strand 11	J	243	256	anti-parallel
Strand 12	J	259	266	anti-parallel
Strand 13	J	269	276	anti-parallel
Strand 14	J	282	291	anti-parallel
Strand 15	J	297	307	anti-parallel
Strand 16	J	312	319	anti-parallel
Strand 17	J	323	331	anti-parallel
Strand 18	J	337	346	anti-parallel
Strand 19	J	351	360	anti-parallel
Strand 20	J	100	110	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	164	first strand
Strand 2	B	168	174	anti-parallel
Strand 3	B	216	221	anti-parallel
Strand 4	B	313	319	anti-parallel
Strand 5	B	279	283	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	368	372	anti-parallel
Strand 3	B	378	382	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	428	430	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EIJ