Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EJ8 entry

There is 1 chain in PDB entry 9EJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1THR 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9EJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 4Right-handed 310
Helix 2
AA2
A
5 15Right-handed alpha
Helix 3
AA3
A
25 37Right-handed alpha
Helix 4
AA4
A
38 47Right-handed alpha
Helix 5
AA5
A
52 61Right-handed alpha
Helix 6
AA6
A
100 105Right-handed alpha
Helix 7
AA7
A
109 122Right-handed alpha
Helix 8
AA8
A
134 142Right-handed alpha
Helix 9
AA9
A
156 171Right-handed alpha
Helix 10
AB1
A
187 193Right-handed alpha
Helix 11
AB2
A
196 201Right-handed 310
Helix 12
AB3
A
204 209Right-handed alpha
Helix 13
AB4
A
210 222Right-handed alpha
Helix 14
AB5
A
224 231Right-handed alpha
Helix 15
AB6
A
232 234Right-handed 310
Helix 16
AB7
A
235 244Right-handed alpha
Helix 17
AB8
A
248 259Right-handed alpha
Helix 18
AB9
A
270 279Right-handed alpha
Helix 19
AC1
A
289 293Right-handed 310
Helix 20
AC2
A
300 313Right-handed alpha
Helix 21
AC3
A
325 335Right-handed alpha
Helix 22
AC4
A
343 377Right-handed alpha
Helix 23
AC5
A
385 387Right-handed 310
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There are 3 sheets in PDB entry 9EJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
389 391anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
87 89anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
125 127parallel
Strand 3
A
147 151parallel
Strand 4
A
175 178parallel
Strand 5
A
263 268parallel
Strand 6
A
284 287parallel
Strand 7
A
317 319parallel
Strand 8
A
339 342parallel
Strand 9
A
93 95parallel
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