Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EJA entry

There are 2 chains in PDB entry 9EJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4LYS 890
B
 G 2 T 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9EJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
24 39Right-handed alpha
Helix 3
AA3
A
53 69Right-handed alpha
Helix 4
AA4
A
252 266Right-handed alpha
Helix 5
AA5
A
278 283Right-handed alpha
Helix 6
AA6
A
285 290Right-handed alpha
Helix 7
AA7
A
293 301Right-handed alpha
Helix 8
AA8
A
312 319Right-handed 310
Helix 9
AA9
A
321 327Right-handed alpha
Helix 10
AB1
A
336 347Right-handed alpha
Helix 11
AB2
A
350 358Right-handed alpha
Helix 12
AB3
A
359 362Right-handed 310
Helix 13
AB4
A
369 374Right-handed alpha
Helix 14
AB5
A
374 381Right-handed alpha
Helix 15
AB6
A
394 396Right-handed 310
Helix 16
AB7
A
397 406Right-handed alpha
Helix 17
AB8
A
412 428Right-handed alpha
Helix 18
AB9
A
431 453Right-handed alpha
Helix 19
AC1
A
470 480Right-handed alpha
Helix 20
AC2
A
486 499Right-handed alpha
Helix 21
AC3
A
520 543Right-handed alpha
Helix 22
AC4
A
596 605Right-handed alpha
Helix 23
AC5
A
619 627Right-handed alpha
Helix 24
AC6
A
663 669Right-handed alpha
Helix 25
AC7
A
671 687Right-handed alpha
Helix 26
AC8
A
697 712Right-handed alpha
Helix 27
AC9
A
712 719Right-handed alpha
Helix 28
AD1
A
731 748Right-handed alpha
Helix 29
AD2
A
772 776Right-handed 310
Helix 30
AD3
A
791 804Right-handed alpha
Helix 31
AD4
A
812 830Right-handed alpha
Helix 32
AD5
A
847 852Right-handed alpha
Helix 33
AD6
A
852 857Right-handed alpha
Helix 34
AD7
A
861 866Right-handed alpha
Helix 35
AD8
A
873 890Right-handed alpha
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There are 6 sheets in PDB entry 9EJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
609 613parallel
Strand 3
A
42 45parallel
Strand 4
A
633 636parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
364 368parallel
Strand 3
A
273 275parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
587 593anti-parallel
Strand 3
A
548 554anti-parallel
Strand 4
A
467 469anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 647first strand
Strand 2
A
840 841parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 694first strand
Strand 2
A
779 782parallel
Strand 3
A
844 845parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
722 723first strand
Strand 2
A
755 756parallel
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