Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EJB entry

There are 2 chains in PDB entry 9EJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4LYS 890
B
 G 1 T 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9EJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
53 65Right-handed alpha
Helix 3
AA3
A
254 266Right-handed alpha
Helix 4
AA4
A
295 302Right-handed alpha
Helix 5
AA5
A
303 308Right-handed 310
Helix 6
AA6
A
316 320Right-handed 310
Helix 7
AA7
A
322 327Right-handed alpha
Helix 8
AA8
A
336 347Right-handed alpha
Helix 9
AA9
A
350 357Right-handed alpha
Helix 10
AB1
A
368 373Right-handed alpha
Helix 11
AB2
A
374 382Right-handed alpha
Helix 12
AB3
A
397 402Right-handed alpha
Helix 13
AB4
A
411 428Right-handed alpha
Helix 14
AB5
A
435 451Right-handed alpha
Helix 15
AB6
A
470 481Right-handed alpha
Helix 16
AB7
A
485 498Right-handed alpha
Helix 17
AB8
A
520 543Right-handed alpha
Helix 18
AB9
A
544 546Right-handed 310
Helix 19
AC1
A
621 626Right-handed alpha
Helix 20
AC2
A
669 687Right-handed alpha
Helix 21
AC3
A
697 712Right-handed alpha
Helix 22
AC4
A
712 721Right-handed alpha
Helix 23
AC5
A
732 749Right-handed alpha
Helix 24
AC6
A
791 809Right-handed alpha
Helix 25
AC7
A
812 830Right-handed alpha
Helix 26
AC8
A
852 857Right-handed alpha
Helix 27
AC9
A
861 866Right-handed alpha
Helix 28
AD1
A
873 890Right-handed alpha
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There are 6 sheets in PDB entry 9EJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
633 636parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
364 365parallel
Strand 3
A
246 247parallel
Strand 4
A
389 392parallel
Strand 5
A
609 612parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
588 593anti-parallel
Strand 3
A
548 553anti-parallel
Strand 4
A
467 469anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 649first strand
Strand 2
A
840 843parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
691 694parallel
Strand 3
A
778 781parallel
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