Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EJE entry

There are 10 chains in PDB entry 9EJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 0	LYS 392
D	GLU 0	LYS 392
G	GLU 0	LYS 392
H	LEU 1	SER 117
I	LEU 1	SER 117
L	ASP 1	LYS 112
M	ASP 1	LYS 112
P	GLU 0	LYS 392
S	LEU 1	SER 117
T	ASP 1	LYS 112

There are 23 helices in PDB entry 9EJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	27	Right-handed alpha
Helix 2	AA2	A	59	63	Right-handed 310
Helix 3	AA3	A	331	336	Right-handed alpha
Helix 4	AA4	A	388	392	Right-handed 310
Helix 5	AA5	D	21	27	Right-handed alpha
Helix 6	AA6	D	59	63	Right-handed 310
Helix 7	AA7	D	331	336	Right-handed alpha
Helix 8	AA8	G	21	27	Right-handed alpha
Helix 9	AA9	G	59	63	Right-handed 310
Helix 10	AB1	G	331	336	Right-handed alpha
Helix 11	AB2	G	388	392	Right-handed 310
Helix 12	AB3	H	53	56	Right-handed 310
Helix 13	AB4	H	78	82	Right-handed 310
Helix 14	AB5	I	53	56	Right-handed 310
Helix 15	AB6	I	78	82	Right-handed 310
Helix 16	AB7	L	84	88	Right-handed 310
Helix 17	AB8	M	84	88	Right-handed 310
Helix 18	AB9	P	21	27	Right-handed alpha
Helix 19	AC1	P	59	63	Right-handed 310
Helix 20	AC2	P	331	336	Right-handed alpha
Helix 21	AC3	S	53	56	Right-handed 310
Helix 22	AC4	S	78	82	Right-handed 310
Helix 23	AC5	T	84	88	Right-handed 310

There are 47 sheets in PDB entry 9EJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	19	first strand
Strand 2	A	361	371	anti-parallel
Strand 3	A	341	351	anti-parallel
Strand 4	A	325	330	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	41	first strand
Strand 2	A	46	56	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	90	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	120	125	anti-parallel
Strand 4	A	129	134	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	154	161	anti-parallel
Strand 3	A	149	151	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	154	161	anti-parallel
Strand 3	A	169	176	anti-parallel
Strand 4	A	179	186	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	201	first strand
Strand 2	A	204	208	anti-parallel
Strand 3	A	219	223	anti-parallel
Strand 4	A	229	233	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	278	283	anti-parallel
Strand 3	A	291	298	anti-parallel
Strand 4	A	309	321	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	19	first strand
Strand 2	D	361	371	anti-parallel
Strand 3	D	341	351	anti-parallel
Strand 4	D	325	330	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	41	first strand
Strand 2	D	46	56	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	90	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	102	first strand
Strand 2	D	107	113	anti-parallel
Strand 3	D	120	125	anti-parallel
Strand 4	D	129	134	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	154	161	anti-parallel
Strand 3	D	149	151	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	154	161	anti-parallel
Strand 3	D	169	176	anti-parallel
Strand 4	D	179	186	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	201	first strand
Strand 2	D	204	208	anti-parallel
Strand 3	D	219	223	anti-parallel
Strand 4	D	229	233	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	278	283	anti-parallel
Strand 3	D	291	298	anti-parallel
Strand 4	D	309	321	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	19	first strand
Strand 2	G	366	371	anti-parallel
Strand 3	G	341	346	anti-parallel
Strand 4	G	325	330	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	41	first strand
Strand 2	G	46	56	anti-parallel
Strand 3	G	74	79	anti-parallel
Strand 4	G	90	94	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	102	first strand
Strand 2	G	107	113	anti-parallel
Strand 3	G	120	125	anti-parallel
Strand 4	G	128	134	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	143	first strand
Strand 2	G	154	161	anti-parallel
Strand 3	G	149	151	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	143	first strand
Strand 2	G	154	161	anti-parallel
Strand 3	G	169	176	anti-parallel
Strand 4	G	180	185	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	196	201	first strand
Strand 2	G	204	209	anti-parallel
Strand 3	G	219	223	anti-parallel
Strand 4	G	229	233	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	275	first strand
Strand 2	G	278	283	anti-parallel
Strand 3	G	291	298	anti-parallel
Strand 4	G	309	321	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	351	first strand
Strand 2	G	361	364	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	13	first strand
Strand 2	H	69	74	anti-parallel
Strand 3	H	59	64	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	37	43	anti-parallel
Strand 3	H	25	31	anti-parallel
Strand 4	H	83	93	anti-parallel
Strand 5	H	100	107	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	37	43	anti-parallel
Strand 3	H	25	31	anti-parallel
Strand 4	H	83	93	anti-parallel
Strand 5	H	111	113	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	13	first strand
Strand 2	I	69	74	anti-parallel
Strand 3	I	59	64	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	51	first strand
Strand 2	I	37	43	anti-parallel
Strand 3	I	25	31	anti-parallel
Strand 4	I	83	93	anti-parallel
Strand 5	I	100	107	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	51	first strand
Strand 2	I	37	43	anti-parallel
Strand 3	I	25	31	anti-parallel
Strand 4	I	83	93	anti-parallel
Strand 5	I	111	113	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	50	53	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	6	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	75	80	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	107	111	parallel
Strand 3	M	89	95	anti-parallel
Strand 4	M	38	43	anti-parallel
Strand 5	M	50	53	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	107	111	parallel
Strand 3	M	89	95	anti-parallel
Strand 4	M	102	103	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	13	19	first strand
Strand 2	P	361	371	anti-parallel
Strand 3	P	341	351	anti-parallel
Strand 4	P	325	330	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	32	41	first strand
Strand 2	P	46	56	anti-parallel
Strand 3	P	74	79	anti-parallel
Strand 4	P	90	94	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	97	102	first strand
Strand 2	P	107	113	anti-parallel
Strand 3	P	120	125	anti-parallel
Strand 4	P	129	134	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	141	143	first strand
Strand 2	P	154	161	anti-parallel
Strand 3	P	149	151	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	141	143	first strand
Strand 2	P	154	161	anti-parallel
Strand 3	P	169	176	anti-parallel
Strand 4	P	179	186	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	197	201	first strand
Strand 2	P	204	208	anti-parallel
Strand 3	P	219	223	anti-parallel
Strand 4	P	229	233	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	274	275	first strand
Strand 2	P	278	283	anti-parallel
Strand 3	P	291	298	anti-parallel
Strand 4	P	309	321	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	8	13	first strand
Strand 2	S	69	74	anti-parallel
Strand 3	S	59	64	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	49	51	first strand
Strand 2	S	37	43	anti-parallel
Strand 3	S	25	31	anti-parallel
Strand 4	S	83	93	anti-parallel
Strand 5	S	100	107	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	49	51	first strand
Strand 2	S	37	43	anti-parallel
Strand 3	S	25	31	anti-parallel
Strand 4	S	83	93	anti-parallel
Strand 5	S	111	113	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	6	first strand
Strand 2	T	19	25	anti-parallel
Strand 3	T	75	80	anti-parallel
Strand 4	T	67	72	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	13	first strand
Strand 2	T	107	111	parallel
Strand 3	T	89	95	anti-parallel
Strand 4	T	38	43	anti-parallel
Strand 5	T	50	53	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	13	first strand
Strand 2	T	107	111	parallel
Strand 3	T	89	95	anti-parallel
Strand 4	T	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJE