Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EJI entry

There are 5 chains in PDB entry 9EJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 0THR 181
B
 SER 3GLN 194
C
 GLN 0PRO 12
D
 ARG 1PRO 215
E
 GLY 3ASP 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9EJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 76Right-handed alpha
Helix 2
AA2
B
51 53Right-handed 310
Helix 3
AA3
B
54 64Right-handed alpha
Helix 4
AA4
B
64 78Right-handed alpha
Helix 5
AA5
B
78 88Right-handed alpha
Helix 6
AA6
B
89 93Right-handed 310
Helix 7
AA7
D
95 99Right-handed 310
Helix 8
AA8
D
196 200Right-handed 310
Helix 9
AA9
E
95 99Right-handed 310
Helix 10
AB1
E
128 132Right-handed 310
Helix 11
AB2
E
143 151Right-handed alpha
Helix 12
AB3
E
210 215Right-handed alpha
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There are 18 sheets in PDB entry 9EJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
4 14anti-parallel
Strand 5
B
8 18anti-parallel
Strand 6
B
23 32anti-parallel
Strand 7
B
35 41anti-parallel
Strand 8
B
47 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
144 152anti-parallel
Strand 4
A
131 133anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
144 152anti-parallel
Strand 4
A
137 138anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
117 122anti-parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
173 177anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
114 122anti-parallel
Strand 3
B
155 162anti-parallel
Strand 4
B
142 144anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
114 122anti-parallel
Strand 3
B
155 162anti-parallel
Strand 4
B
148 149anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 138first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
171 176anti-parallel
Strand 4
B
184 188anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
76 81anti-parallel
Strand 5
D
65 68anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
118 123parallel
Strand 3
D
100 108anti-parallel
Strand 4
D
38 44anti-parallel
Strand 5
D
50 55anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
118 123parallel
Strand 3
D
100 108anti-parallel
Strand 4
D
111 114anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 135first strand
Strand 2
D
145 150anti-parallel
Strand 3
D
181 190anti-parallel
Strand 4
D
167 168anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 135first strand
Strand 2
D
145 150anti-parallel
Strand 3
D
181 190anti-parallel
Strand 4
D
172 176anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
87 91anti-parallel
Strand 4
E
76 80anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
121 126parallel
Strand 3
E
100 107anti-parallel
Strand 4
E
38 44anti-parallel
Strand 5
E
51 57anti-parallel
Strand 6
E
64 68anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
121 126parallel
Strand 3
E
100 107anti-parallel
Strand 4
E
116 117anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 140first strand
Strand 2
E
152 162anti-parallel
Strand 3
E
200 209anti-parallel
Strand 4
E
182 184anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 140first strand
Strand 2
E
152 162anti-parallel
Strand 3
E
200 209anti-parallel
Strand 4
E
189 190anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 178first strand
Strand 2
E
167 173anti-parallel
Strand 3
E
219 226anti-parallel
Strand 4
E
245 252anti-parallel
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