Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EJM entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 9EJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 12	SER 937
B	LEU 249	SER 411
B	PHE 413	LEU 563
B	PRO 565	LEU 588
C	THR 154	PRO 312

There are 28 helices in PDB entry 9EJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed alpha
Helix 2	AA2	A	126	131	Right-handed 310
Helix 3	AA3	A	170	177	Right-handed alpha
Helix 4	AA4	A	179	183	Right-handed 310
Helix 5	AA5	A	397	410	Right-handed alpha
Helix 6	AA6	A	502	505	Right-handed 310
Helix 7	AA7	A	633	637	Right-handed 310
Helix 8	AA8	A	651	655	Right-handed 310
Helix 9	AA9	A	751	755	Right-handed 310
Helix 10	AB1	A	793	798	Right-handed alpha
Helix 11	AB2	A	835	840	Right-handed alpha
Helix 12	AB3	A	894	900	Right-handed alpha
Helix 13	AB4	B	250	252	Right-handed 310
Helix 14	AB5	B	298	309	Right-handed alpha
Helix 15	AB6	B	310	312	Right-handed 310
Helix 16	AB7	B	339	348	Right-handed alpha
Helix 17	AB8	B	351	372	Right-handed alpha
Helix 18	AB9	B	421	427	Right-handed alpha
Helix 19	AC1	B	432	449	Right-handed alpha
Helix 20	AC2	B	453	457	Right-handed 310
Helix 21	AC3	B	466	477	Right-handed alpha
Helix 22	AC4	B	486	497	Right-handed alpha
Helix 23	AC5	B	511	518	Right-handed alpha
Helix 24	AC6	B	526	531	Right-handed alpha
Helix 25	AC7	B	545	552	Right-handed 310
Helix 26	AC8	B	553	558	Right-handed alpha
Helix 27	AC9	C	201	207	Right-handed alpha
Helix 28	AD1	C	227	238	Right-handed alpha

There are 23 sheets in PDB entry 9EJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	25	first strand
Strand 2	A	921	924	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	41	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	55	59	anti-parallel
Strand 4	A	65	69	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	87	92	anti-parallel
Strand 3	A	96	101	anti-parallel
Strand 4	A	112	118	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	143	146	anti-parallel
Strand 3	A	154	157	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	196	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	223	228	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	238	first strand
Strand 2	A	244	249	anti-parallel
Strand 3	A	254	258	anti-parallel
Strand 4	A	271	272	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	289	first strand
Strand 2	A	297	301	anti-parallel
Strand 3	A	314	319	anti-parallel
Strand 4	A	322	327	anti-parallel
Strand 5	A	490	492	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	338	first strand
Strand 2	A	352	356	anti-parallel
Strand 3	A	361	365	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	393	first strand
Strand 2	A	437	442	anti-parallel
Strand 3	A	446	451	anti-parallel
Strand 4	A	458	464	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	933	934	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	513	first strand
Strand 2	A	518	523	anti-parallel
Strand 3	A	527	534	anti-parallel
Strand 4	A	576	586	anti-parallel
Strand 5	A	543	548	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	571	573	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	597	first strand
Strand 2	A	602	606	anti-parallel
Strand 3	A	610	615	anti-parallel
Strand 4	A	620	626	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	699	first strand
Strand 2	C	171	174	anti-parallel
Strand 3	C	192	197	anti-parallel
Strand 4	C	214	218	anti-parallel
Strand 5	C	242	247	anti-parallel
Strand 6	C	156	160	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	699	first strand
Strand 2	C	171	174	anti-parallel
Strand 3	C	192	197	anti-parallel
Strand 4	C	214	218	anti-parallel
Strand 5	C	221	222	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	721	first strand
Strand 2	A	730	737	anti-parallel
Strand 3	A	741	748	anti-parallel
Strand 4	A	761	769	anti-parallel
Strand 5	C	296	299	anti-parallel
Strand 6	C	305	306	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	781	first strand
Strand 2	A	810	815	anti-parallel
Strand 3	A	818	823	anti-parallel
Strand 4	A	829	834	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	852	first strand
Strand 2	A	860	868	anti-parallel
Strand 3	A	872	876	anti-parallel
Strand 4	A	883	888	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	903	first strand
Strand 2	A	909	910	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	912	914	first strand
Strand 2	A	917	918	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	262	first strand
Strand 2	B	266	273	anti-parallel
Strand 3	B	278	286	anti-parallel
Strand 4	B	327	333	anti-parallel
Strand 5	B	320	323	anti-parallel
Strand 6	B	584	585	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	385	first strand
Strand 2	B	393	394	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	180	first strand
Strand 2	C	187	190	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJM