Analysis of interatomic Contacts of Structural Units in PDB entry:
9EJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EJW entry

There are 2 chains in PDB entry 9EJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 22SER 174
B
 ALA 31ARG 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 9EJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 58Right-handed alpha
Helix 2
AA2
A
64 74Right-handed alpha
Helix 3
AA3
A
167 173Right-handed alpha
Helix 4
AA4
B
143 147Right-handed alpha
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There are 3 sheets in PDB entry 9EJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 163first strand
Strand 2
A
142 151anti-parallel
Strand 3
A
23 28parallel
Strand 4
A
35 40anti-parallel
Strand 5
A
118 122anti-parallel
Strand 6
A
82 84parallel
Strand 7
A
87 92anti-parallel
Strand 8
A
105 109anti-parallel
Strand 9
B
51 57parallel
Strand 10
B
148 156anti-parallel
Strand 11
B
83 91anti-parallel
Strand 12
B
94 104anti-parallel
Strand 13
B
107 116anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
130 131anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
69 72anti-parallel
Strand 3
B
134 136anti-parallel
Strand 4
B
125 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il