Analysis of interatomic Contacts of Structural Units in PDB entry:
9EK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EK8 entry

There are 18 chains in PDB entry 9EK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLY 48
B
 ALA 1HIS 41
C
 ASN 2GLY 48
D
 ALA 1HIS 41
E
 ASN 2GLY 48
F
 ALA 1HIS 41
G
 ASN 2GLY 48
H
 ALA 1HIS 41
I
 ASN 2GLY 48
J
 ALA 1HIS 41
K
 ASN 2GLY 48
L
 ALA 1HIS 41
M
 ASN 2GLY 48
N
 ALA 1HIS 41
O
 ASN 2GLY 48
P
 ALA 1HIS 41
Q
 ASN 2GLY 48
R
 ALA 1HIS 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 9EK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
11 38Right-handed alpha
Helix 3
AA3
A
39 47Right-handed alpha
Helix 4
AA4
B
4 37Right-handed alpha
Helix 5
AA5
C
5 9Right-handed 310
Helix 6
AA6
C
11 38Right-handed alpha
Helix 7
AA7
C
39 47Right-handed alpha
Helix 8
AA8
D
4 37Right-handed alpha
Helix 9
AA9
E
5 9Right-handed 310
Helix 10
AB1
E
11 38Right-handed alpha
Helix 11
AB2
E
39 47Right-handed alpha
Helix 12
AB3
F
4 37Right-handed alpha
Helix 13
AB4
G
5 9Right-handed 310
Helix 14
AB5
G
11 38Right-handed alpha
Helix 15
AB6
G
39 47Right-handed alpha
Helix 16
AB7
H
4 37Right-handed alpha
Helix 17
AB8
I
5 9Right-handed 310
Helix 18
AB9
I
11 38Right-handed alpha
Helix 19
AC1
I
39 47Right-handed alpha
Helix 20
AC2
J
4 37Right-handed alpha
Helix 21
AC3
K
5 9Right-handed 310
Helix 22
AC4
K
11 38Right-handed alpha
Helix 23
AC5
K
39 47Right-handed alpha
Helix 24
AC6
L
4 37Right-handed alpha
Helix 25
AC7
M
5 9Right-handed 310
Helix 26
AC8
M
11 38Right-handed alpha
Helix 27
AC9
M
39 47Right-handed alpha
Helix 28
AD1
N
4 37Right-handed alpha
Helix 29
AD2
O
5 9Right-handed 310
Helix 30
AD3
O
11 38Right-handed alpha
Helix 31
AD4
O
39 47Right-handed alpha
Helix 32
AD5
P
4 37Right-handed alpha
Helix 33
AD6
Q
5 9Right-handed 310
Helix 34
AD7
Q
11 38Right-handed alpha
Helix 35
AD8
Q
39 47Right-handed alpha
Helix 36
AD9
R
4 37Right-handed alpha
Back to top of page
There are no sheets in PDB entry 9EK8
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il