Analysis of interatomic Contacts of Structural Units in PDB entry:
9EMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EMC entry

There are 6 chains in PDB entry 9EMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 12	LYS 456
D	THR 17	LEU 451
B	THR 12	LYS 456
C	THR 12	LYS 456
F	THR 17	LEU 451
E	THR 17	LEU 451

There are 96 helices in PDB entry 9EMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	59	Right-handed alpha
Helix 2	AA2	A	76	88	Right-handed alpha
Helix 3	AA3	A	99	102	Right-handed 310
Helix 4	AA4	A	107	119	Right-handed alpha
Helix 5	AA5	A	240	247	Right-handed alpha
Helix 6	AA6	A	272	289	Right-handed alpha
Helix 7	AA7	A	303	307	Right-handed 310
Helix 8	AA8	A	308	320	Right-handed alpha
Helix 9	AA9	A	347	350	Right-handed 310
Helix 10	AB1	A	351	356	Right-handed alpha
Helix 11	AB2	A	367	382	Right-handed alpha
Helix 12	AB3	A	387	401	Right-handed alpha
Helix 13	AB4	A	402	408	Right-handed alpha
Helix 14	AB5	A	409	421	Right-handed alpha
Helix 15	AB6	A	426	437	Right-handed alpha
Helix 16	AB7	A	439	450	Right-handed alpha
Helix 17	AB8	D	49	66	Right-handed alpha
Helix 18	AB9	D	82	95	Right-handed alpha
Helix 19	AC1	D	114	125	Right-handed alpha
Helix 20	AC2	D	244	251	Right-handed alpha
Helix 21	AC3	D	255	259	Right-handed 310
Helix 22	AC4	D	269	287	Right-handed alpha
Helix 23	AC5	D	300	304	Right-handed 310
Helix 24	AC6	D	305	316	Right-handed alpha
Helix 25	AC7	D	343	346	Right-handed 310
Helix 26	AC8	D	347	352	Right-handed alpha
Helix 27	AC9	D	363	378	Right-handed alpha
Helix 28	AD1	D	383	397	Right-handed alpha
Helix 29	AD2	D	398	416	Right-handed alpha
Helix 30	AD3	D	422	433	Right-handed alpha
Helix 31	AD4	D	435	446	Right-handed alpha
Helix 32	AD5	D	447	449	Right-handed 310
Helix 33	AD6	B	42	59	Right-handed alpha
Helix 34	AD7	B	76	88	Right-handed alpha
Helix 35	AD8	B	99	102	Right-handed 310
Helix 36	AD9	B	107	119	Right-handed alpha
Helix 37	AE1	B	240	247	Right-handed alpha
Helix 38	AE2	B	272	289	Right-handed alpha
Helix 39	AE3	B	303	307	Right-handed 310
Helix 40	AE4	B	308	320	Right-handed alpha
Helix 41	AE5	B	347	350	Right-handed 310
Helix 42	AE6	B	351	356	Right-handed alpha
Helix 43	AE7	B	367	382	Right-handed alpha
Helix 44	AE8	B	387	401	Right-handed alpha
Helix 45	AE9	B	402	408	Right-handed alpha
Helix 46	AF1	B	409	421	Right-handed alpha
Helix 47	AF2	B	426	437	Right-handed alpha
Helix 48	AF3	B	439	450	Right-handed alpha
Helix 49	AF4	C	42	59	Right-handed alpha
Helix 50	AF5	C	76	88	Right-handed alpha
Helix 51	AF6	C	99	102	Right-handed 310
Helix 52	AF7	C	107	119	Right-handed alpha
Helix 53	AF8	C	240	247	Right-handed alpha
Helix 54	AF9	C	272	289	Right-handed alpha
Helix 55	AG1	C	303	307	Right-handed 310
Helix 56	AG2	C	308	320	Right-handed alpha
Helix 57	AG3	C	347	350	Right-handed 310
Helix 58	AG4	C	351	356	Right-handed alpha
Helix 59	AG5	C	367	382	Right-handed alpha
Helix 60	AG6	C	387	401	Right-handed alpha
Helix 61	AG7	C	402	408	Right-handed alpha
Helix 62	AG8	C	409	421	Right-handed alpha
Helix 63	AG9	C	426	437	Right-handed alpha
Helix 64	AH1	C	439	450	Right-handed alpha
Helix 65	AH2	F	49	66	Right-handed alpha
Helix 66	AH3	F	82	95	Right-handed alpha
Helix 67	AH4	F	114	125	Right-handed alpha
Helix 68	AH5	F	244	251	Right-handed alpha
Helix 69	AH6	F	255	259	Right-handed 310
Helix 70	AH7	F	269	287	Right-handed alpha
Helix 71	AH8	F	300	304	Right-handed 310
Helix 72	AH9	F	305	316	Right-handed alpha
Helix 73	AI1	F	343	346	Right-handed 310
Helix 74	AI2	F	347	352	Right-handed alpha
Helix 75	AI3	F	363	378	Right-handed alpha
Helix 76	AI4	F	383	397	Right-handed alpha
Helix 77	AI5	F	398	416	Right-handed alpha
Helix 78	AI6	F	422	433	Right-handed alpha
Helix 79	AI7	F	435	446	Right-handed alpha
Helix 80	AI8	F	447	449	Right-handed 310
Helix 81	AI9	E	49	66	Right-handed alpha
Helix 82	AJ1	E	82	95	Right-handed alpha
Helix 83	AJ2	E	114	125	Right-handed alpha
Helix 84	AJ3	E	244	251	Right-handed alpha
Helix 85	AJ4	E	255	259	Right-handed 310
Helix 86	AJ5	E	269	287	Right-handed alpha
Helix 87	AJ6	E	300	304	Right-handed 310
Helix 88	AJ7	E	305	316	Right-handed alpha
Helix 89	AJ8	E	343	346	Right-handed 310
Helix 90	AJ9	E	347	352	Right-handed alpha
Helix 91	AK1	E	363	378	Right-handed alpha
Helix 92	AK2	E	383	397	Right-handed alpha
Helix 93	AK3	E	398	416	Right-handed alpha
Helix 94	AK4	E	422	433	Right-handed alpha
Helix 95	AK5	E	435	446	Right-handed alpha
Helix 96	AK6	E	447	449	Right-handed 310

There are 24 sheets in PDB entry 9EMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	39	40	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	298	302	parallel
Strand 3	A	326	331	parallel
Strand 4	A	65	69	parallel
Strand 5	A	358	362	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	239	first strand
Strand 2	A	120	124	anti-parallel
Strand 3	A	292	296	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	345	346	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	46	47	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	295	299	parallel
Strand 3	D	323	328	parallel
Strand 4	D	72	77	parallel
Strand 5	D	355	359	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	243	first strand
Strand 2	D	127	133	anti-parallel
Strand 3	D	289	293	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	341	342	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	39	40	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	298	302	parallel
Strand 3	B	326	331	parallel
Strand 4	B	65	69	parallel
Strand 5	B	358	362	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	239	first strand
Strand 2	B	120	124	anti-parallel
Strand 3	B	292	296	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	345	346	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	39	40	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	97	first strand
Strand 2	C	298	302	parallel
Strand 3	C	326	331	parallel
Strand 4	C	65	69	parallel
Strand 5	C	358	362	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	239	first strand
Strand 2	C	120	124	anti-parallel
Strand 3	C	292	296	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	345	346	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	46	47	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	104	first strand
Strand 2	F	295	299	parallel
Strand 3	F	323	328	parallel
Strand 4	F	72	77	parallel
Strand 5	F	355	359	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	243	first strand
Strand 2	F	127	133	anti-parallel
Strand 3	F	289	293	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	333	334	first strand
Strand 2	F	341	342	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	E	46	47	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	104	first strand
Strand 2	E	295	299	parallel
Strand 3	E	323	328	parallel
Strand 4	E	72	77	parallel
Strand 5	E	355	359	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	243	first strand
Strand 2	E	127	133	anti-parallel
Strand 3	E	289	293	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	334	first strand
Strand 2	E	341	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EMC