Analysis of interatomic Contacts of Structural Units in PDB entry:
9EME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EME entry

There are 6 chains in PDB entry 9EME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9LEU 108
B
 ALA 9LEU 108
C
 ALA 9LEU 108
D
 ALA 9LEU 108
E
 ALA 9LEU 108
F
 ALA 9LEU 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 9EME

There are 8 sheets in PDB entry 9EME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 23first strand
Strand 2
B
15 23parallel
Strand 3
C
15 23parallel
Strand 4
D
15 23parallel
Strand 5
E
15 23parallel
Strand 6
F
15 23parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
B
26 30parallel
Strand 3
C
26 30parallel
Strand 4
D
26 30parallel
Strand 5
E
26 30parallel
Strand 6
F
26 30parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
B
34 37parallel
Strand 3
C
34 37parallel
Strand 4
D
34 37parallel
Strand 5
E
34 37parallel
Strand 6
F
34 37parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
B
45 47parallel
Strand 3
C
45 47parallel
Strand 4
D
45 47parallel
Strand 5
E
45 47parallel
Strand 6
F
45 47parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
B
67 68parallel
Strand 3
C
67 68parallel
Strand 4
D
67 68parallel
Strand 5
E
67 68parallel
Strand 6
F
67 68parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 78first strand
Strand 2
B
71 78parallel
Strand 3
C
71 78parallel
Strand 4
D
71 78parallel
Strand 5
E
71 78parallel
Strand 6
F
71 78parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
B
81 83parallel
Strand 3
C
81 83parallel
Strand 4
D
81 83parallel
Strand 5
E
81 83parallel
Strand 6
F
81 83parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
B
103 106parallel
Strand 3
C
103 106parallel
Strand 4
D
103 106parallel
Strand 5
E
103 106parallel
Strand 6
F
103 106parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il