Analysis of interatomic Contacts of Structural Units in PDB entry:
9EML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EML entry

There are 2 chains in PDB entry 9EML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6800LEU 7099
B
 CYS 4270GLN 4385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9EML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6800 6804Right-handed 310
Helix 2
AA2
A
6810 6815Right-handed alpha
Helix 3
AA3
A
6839 6853Right-handed alpha
Helix 4
AA4
A
6877 6887Right-handed alpha
Helix 5
AA5
A
6912 6914Right-handed 310
Helix 6
AA6
A
6931 6936Right-handed 310
Helix 7
AA7
A
6946 6958Right-handed alpha
Helix 8
AA8
A
6975 6983Right-handed alpha
Helix 9
AA9
A
6995 6997Right-handed 310
Helix 10
AB1
A
7018 7033Right-handed alpha
Helix 11
AB2
A
7039 7044Right-handed 310
Helix 12
AB3
A
7061 7065Right-handed 310
Helix 13
AB4
A
7066 7075Right-handed alpha
Helix 14
AB5
B
4275 4286Right-handed alpha
Helix 15
AB6
B
4323 4327Right-handed alpha
Helix 16
AB7
B
4327 4333Right-handed alpha
Helix 17
AB8
B
4355 4357Right-handed 310
Helix 18
AB9
B
4359 4367Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9EML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6806 6808first strand
Strand 2
A
6985 6993anti-parallel
Strand 3
A
7002 7009anti-parallel
Strand 4
A
6959 6969anti-parallel
Strand 5
A
6922 6927parallel
Strand 6
A
6864 6868parallel
Strand 7
A
6892 6897parallel
Strand 8
A
6907 6910parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6916 6918first strand
Strand 2
A
7088 7090anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7056 7058first strand
Strand 2
A
7078 7080parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4308 4309first strand
Strand 2
B
4349 4353anti-parallel
Strand 3
B
4318 4322anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il