Analysis of interatomic Contacts of Structural Units in PDB entry:
9EMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EMM entry

There are 5 chains in PDB entry 9EMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 17	LEU 509
E	LEU 38	GLY 475
C	ARG 17	LEU 509
D	ARG 17	LEU 509
B	LEU 4	LEU 509

There are 90 helices in PDB entry 9EMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	48	Right-handed alpha
Helix 2	AA2	A	66	81	Right-handed alpha
Helix 3	AA3	A	88	96	Right-handed alpha
Helix 4	AA4	A	107	122	Right-handed alpha
Helix 5	AA5	A	123	124	Right-handed 310
Helix 6	AA6	A	125	130	Right-handed 310
Helix 7	AA7	A	138	140	Right-handed 310
Helix 8	AA8	A	141	153	Right-handed alpha
Helix 9	AA9	A	172	187	Right-handed alpha
Helix 10	AB1	A	203	212	Right-handed alpha
Helix 11	AB2	A	217	221	Right-handed 310
Helix 12	AB3	A	242	247	Right-handed alpha
Helix 13	AB4	A	250	255	Right-handed alpha
Helix 14	AB5	A	259	269	Right-handed alpha
Helix 15	AB6	A	276	288	Right-handed alpha
Helix 16	AB7	A	298	302	Right-handed 310
Helix 17	AB8	A	382	386	Right-handed 310
Helix 18	AB9	A	425	430	Right-handed alpha
Helix 19	AC1	A	437	448	Right-handed alpha
Helix 20	AC2	A	457	475	Right-handed alpha
Helix 21	AC3	A	478	482	Right-handed 310
Helix 22	AC4	A	492	501	Right-handed alpha
Helix 23	AC5	E	39	51	Right-handed alpha
Helix 24	AC6	E	220	227	Right-handed alpha
Helix 25	AC7	E	247	256	Right-handed alpha
Helix 26	AC8	E	270	282	Right-handed alpha
Helix 27	AC9	E	288	293	Right-handed 310
Helix 28	AD1	E	294	305	Right-handed alpha
Helix 29	AD2	E	307	316	Right-handed 310
Helix 30	AD3	E	329	343	Right-handed alpha
Helix 31	AD4	E	413	417	Right-handed 310
Helix 32	AD5	E	440	451	Right-handed alpha
Helix 33	AD6	E	455	473	Right-handed alpha
Helix 34	AD7	C	31	38	Right-handed alpha
Helix 35	AD8	C	38	48	Right-handed alpha
Helix 36	AD9	C	67	82	Right-handed alpha
Helix 37	AE1	C	87	96	Right-handed alpha
Helix 38	AE2	C	107	126	Right-handed alpha
Helix 39	AE3	C	138	140	Right-handed 310
Helix 40	AE4	C	141	153	Right-handed alpha
Helix 41	AE5	C	173	184	Right-handed alpha
Helix 42	AE6	C	200	213	Right-handed alpha
Helix 43	AE7	C	217	221	Right-handed 310
Helix 44	AE8	C	242	250	Right-handed alpha
Helix 45	AE9	C	258	268	Right-handed alpha
Helix 46	AF1	C	278	289	Right-handed alpha
Helix 47	AF2	C	320	324	Right-handed 310
Helix 48	AF3	C	425	430	Right-handed alpha
Helix 49	AF4	C	436	448	Right-handed alpha
Helix 50	AF5	C	456	474	Right-handed alpha
Helix 51	AF6	C	492	501	Right-handed alpha
Helix 52	AF7	D	33	48	Right-handed alpha
Helix 53	AF8	D	66	81	Right-handed alpha
Helix 54	AF9	D	87	95	Right-handed alpha
Helix 55	AG1	D	107	126	Right-handed alpha
Helix 56	AG2	D	138	140	Right-handed 310
Helix 57	AG3	D	141	152	Right-handed alpha
Helix 58	AG4	D	157	161	Right-handed 310
Helix 59	AG5	D	172	185	Right-handed alpha
Helix 60	AG6	D	202	212	Right-handed alpha
Helix 61	AG7	D	242	250	Right-handed alpha
Helix 62	AG8	D	259	268	Right-handed alpha
Helix 63	AG9	D	276	289	Right-handed alpha
Helix 64	AH1	D	320	324	Right-handed 310
Helix 65	AH2	D	426	430	Right-handed alpha
Helix 66	AH3	D	436	448	Right-handed alpha
Helix 67	AH4	D	449	453	Right-handed 310
Helix 68	AH5	D	455	475	Right-handed alpha
Helix 69	AH6	D	492	501	Right-handed alpha
Helix 70	AH7	B	33	48	Right-handed alpha
Helix 71	AH8	B	66	81	Right-handed alpha
Helix 72	AH9	B	88	98	Right-handed alpha
Helix 73	AI1	B	109	126	Right-handed alpha
Helix 74	AI2	B	138	140	Right-handed 310
Helix 75	AI3	B	141	153	Right-handed alpha
Helix 76	AI4	B	172	187	Right-handed alpha
Helix 77	AI5	B	201	213	Right-handed alpha
Helix 78	AI6	B	243	248	Right-handed alpha
Helix 79	AI7	B	249	256	Right-handed alpha
Helix 80	AI8	B	259	266	Right-handed alpha
Helix 81	AI9	B	277	289	Right-handed alpha
Helix 82	AJ1	B	298	302	Right-handed 310
Helix 83	AJ2	B	320	324	Right-handed 310
Helix 84	AJ3	B	383	387	Right-handed 310
Helix 85	AJ4	B	426	431	Right-handed alpha
Helix 86	AJ5	B	436	448	Right-handed alpha
Helix 87	AJ6	B	455	466	Right-handed alpha
Helix 88	AJ7	B	467	475	Right-handed alpha
Helix 89	AJ8	B	478	482	Right-handed 310
Helix 90	AJ9	B	492	501	Right-handed alpha

There are 22 sheets in PDB entry 9EMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	56	59	parallel
Strand 3	A	98	100	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	161	165	parallel
Strand 3	A	192	194	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	353	358	anti-parallel
Strand 3	A	226	234	parallel
Strand 4	A	366	372	anti-parallel
Strand 5	A	395	397	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	353	358	anti-parallel
Strand 3	A	226	234	parallel
Strand 4	A	366	372	anti-parallel
Strand 5	A	391	392	anti-parallel
Strand 6	A	404	409	anti-parallel
Strand 7	A	417	422	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	305	309	anti-parallel
Strand 3	A	484	486	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	71	first strand
Strand 2	E	171	173	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	237	first strand
Strand 2	E	258	260	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	353	first strand
Strand 2	E	359	364	anti-parallel
Strand 3	E	372	377	anti-parallel
Strand 4	E	319	324	parallel
Strand 5	E	391	397	anti-parallel
Strand 6	E	408	410	anti-parallel
Strand 7	E	430	432	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	23	27	parallel
Strand 3	C	131	134	parallel
Strand 4	C	163	165	parallel
Strand 5	C	192	194	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	293	first strand
Strand 2	C	338	343	anti-parallel
Strand 3	C	352	356	anti-parallel
Strand 4	C	228	234	parallel
Strand 5	C	365	371	anti-parallel
Strand 6	C	391	393	anti-parallel
Strand 7	C	403	409	anti-parallel
Strand 8	C	417	422	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	309	first strand
Strand 2	C	484	486	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	316	318	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	56	58	parallel
Strand 3	D	23	27	parallel
Strand 4	D	131	135	parallel
Strand 5	D	163	164	parallel
Strand 6	D	192	193	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	340	343	anti-parallel
Strand 3	D	353	354	anti-parallel
Strand 4	D	226	233	parallel
Strand 5	D	366	372	anti-parallel
Strand 6	D	391	395	anti-parallel
Strand 7	D	404	409	anti-parallel
Strand 8	D	417	421	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	485	486	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	316	318	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	402	first strand
Strand 2	D	424	425	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	131	133	parallel
Strand 3	B	161	164	parallel
Strand 4	B	192	193	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	99	100	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	293	first strand
Strand 2	B	338	343	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	226	234	parallel
Strand 5	B	365	372	anti-parallel
Strand 6	B	391	395	anti-parallel
Strand 7	B	401	409	anti-parallel
Strand 8	B	417	425	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	484	486	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	312	first strand
Strand 2	B	317	318	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EMM