Analysis of interatomic Contacts of Structural Units in PDB entry:
9EMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EMY entry

There are 7 chains in PDB entry 9EMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 157	ASN 561
B	TYR 158	LYS 560
C	GLU 4	SER 128
D	GLU 4	SER 129
E	GLN 3	SER 127
F	GLU 8	SER 127
G	SER 157	ILE 229

There are100 helices in PDB entry 9EMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	161	171	Right-handed alpha
Helix 2	AA2	A	187	189	Right-handed 310
Helix 3	AA3	A	234	247	Right-handed alpha
Helix 4	AA4	A	257	272	Right-handed alpha
Helix 5	AA5	A	303	316	Right-handed alpha
Helix 6	AA6	A	334	342	Right-handed alpha
Helix 7	AA7	A	352	374	Right-handed alpha
Helix 8	AA8	A	381	383	Right-handed 310
Helix 9	AA9	A	431	435	Right-handed 310
Helix 10	AB1	A	436	449	Right-handed alpha
Helix 11	AB2	A	453	460	Right-handed alpha
Helix 12	AB3	A	463	468	Right-handed alpha
Helix 13	AB4	A	469	471	Right-handed 310
Helix 14	AB5	A	474	492	Right-handed alpha
Helix 15	AB6	A	504	513	Right-handed alpha
Helix 16	AB7	A	520	524	Right-handed 310
Helix 17	AB8	A	527	539	Right-handed alpha
Helix 18	AB9	A	539	546	Right-handed alpha
Helix 19	AC1	A	547	552	Right-handed alpha
Helix 20	AC2	A	553	559	Right-handed 310
Helix 21	AC3	B	161	171	Right-handed alpha
Helix 22	AC4	B	187	189	Right-handed 310
Helix 23	AC5	B	234	247	Right-handed alpha
Helix 24	AC6	B	257	272	Right-handed alpha
Helix 25	AC7	B	303	316	Right-handed alpha
Helix 26	AC8	B	334	344	Right-handed alpha
Helix 27	AC9	B	352	374	Right-handed alpha
Helix 28	AD1	B	381	383	Right-handed 310
Helix 29	AD2	B	431	435	Right-handed 310
Helix 30	AD3	B	436	449	Right-handed alpha
Helix 31	AD4	B	453	459	Right-handed alpha
Helix 32	AD5	B	463	468	Right-handed alpha
Helix 33	AD6	B	469	471	Right-handed 310
Helix 34	AD7	B	474	492	Right-handed alpha
Helix 35	AD8	B	504	513	Right-handed alpha
Helix 36	AD9	B	527	539	Right-handed alpha
Helix 37	AE1	B	539	546	Right-handed alpha
Helix 38	AE2	B	547	552	Right-handed alpha
Helix 39	AE3	B	553	558	Right-handed 310
Helix 40	AE4	C	64	67	Right-handed 310
Helix 41	AE5	C	89	93	Right-handed 310
Helix 42	AE6	C	106	111	Right-handed alpha
Helix 43	AE7	C	112	116	Right-handed 310
Helix 44	AE8	D	64	67	Right-handed 310
Helix 45	AE9	D	89	93	Right-handed 310
Helix 46	AF1	D	106	111	Right-handed alpha
Helix 47	AF2	D	112	116	Right-handed 310
Helix 48	AF3	E	30	34	Right-handed 310
Helix 49	AF4	E	89	93	Right-handed 310
Helix 50	AF5	F	89	93	Right-handed 310
Helix 51	AF6	G	161	171	Right-handed alpha
Helix 52	AF7	G	187	189	Right-handed 310
Helix 53	AF8	G	234	247	Right-handed alpha
Helix 54	AF9	G	257	272	Right-handed alpha
Helix 55	AG1	G	303	316	Right-handed alpha
Helix 56	AG2	G	334	342	Right-handed alpha
Helix 57	AG3	G	352	374	Right-handed alpha
Helix 58	AG4	G	381	383	Right-handed 310
Helix 59	AG5	G	431	435	Right-handed 310
Helix 60	AG6	G	436	449	Right-handed alpha
Helix 61	AG7	G	453	460	Right-handed alpha
Helix 62	AG8	G	463	468	Right-handed alpha
Helix 63	AG9	G	469	471	Right-handed 310
Helix 64	AH1	G	474	492	Right-handed alpha
Helix 65	AH2	G	504	513	Right-handed alpha
Helix 66	AH3	G	520	524	Right-handed 310
Helix 67	AH4	G	527	539	Right-handed alpha
Helix 68	AH5	G	539	546	Right-handed alpha
Helix 69	AH6	G	547	552	Right-handed alpha
Helix 70	AH7	G	553	559	Right-handed 310
Helix 71	AH8	H	161	171	Right-handed alpha
Helix 72	AH9	H	187	189	Right-handed 310
Helix 73	AI1	H	234	247	Right-handed alpha
Helix 74	AI2	H	257	272	Right-handed alpha
Helix 75	AI3	H	303	316	Right-handed alpha
Helix 76	AI4	H	334	344	Right-handed alpha
Helix 77	AI5	H	352	374	Right-handed alpha
Helix 78	AI6	H	381	383	Right-handed 310
Helix 79	AI7	H	431	435	Right-handed 310
Helix 80	AI8	H	436	449	Right-handed alpha
Helix 81	AI9	H	453	460	Right-handed alpha
Helix 82	AJ1	H	463	468	Right-handed alpha
Helix 83	AJ2	H	469	471	Right-handed 310
Helix 84	AJ3	H	474	492	Right-handed alpha
Helix 85	AJ4	H	504	513	Right-handed alpha
Helix 86	AJ5	H	527	539	Right-handed alpha
Helix 87	AJ6	H	539	546	Right-handed alpha
Helix 88	AJ7	H	547	552	Right-handed alpha
Helix 89	AJ8	H	553	558	Right-handed 310
Helix 90	AJ9	I	64	67	Right-handed 310
Helix 91	AK1	I	89	93	Right-handed 310
Helix 92	AK2	I	106	111	Right-handed alpha
Helix 93	AK3	I	112	116	Right-handed 310
Helix 94	AK4	J	64	67	Right-handed 310
Helix 95	AK5	J	89	93	Right-handed 310
Helix 96	AK6	J	105	110	Right-handed 310
Helix 97	AK7	J	112	116	Right-handed 310
Helix 98	AK8	K	30	34	Right-handed 310
Helix 99	AK9	K	89	93	Right-handed 310
Helix 100	AL1	L	89	93	Right-handed 310

There are 44 sheets in PDB entry 9EMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	279	285	parallel
Strand 3	A	322	328	anti-parallel
Strand 4	A	225	233	anti-parallel
Strand 5	A	208	214	anti-parallel
Strand 6	A	192	193	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	184	185	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	385	387	anti-parallel
Strand 3	A	394	396	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	415	421	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	472	473	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	279	285	parallel
Strand 3	B	322	328	anti-parallel
Strand 4	B	224	233	anti-parallel
Strand 5	B	208	215	anti-parallel
Strand 6	B	192	193	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	184	185	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	385	387	anti-parallel
Strand 3	B	394	396	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	410	first strand
Strand 2	B	414	421	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	424	first strand
Strand 2	B	472	473	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	79	85	anti-parallel
Strand 4	C	71	74	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	123	127	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	123	127	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	118	119	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	79	85	anti-parallel
Strand 4	D	71	74	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	123	127	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	35	41	anti-parallel
Strand 5	D	48	53	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	123	127	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	118	119	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	20	28	anti-parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	121	125	parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	36	41	anti-parallel
Strand 5	E	48	53	anti-parallel
Strand 6	E	60	62	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	121	125	parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	116	117	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	121	126	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	36	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	121	126	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	116	117	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	24	first strand
Strand 2	F	80	85	anti-parallel
Strand 3	F	70	75	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	175	first strand
Strand 2	G	279	285	parallel
Strand 3	G	322	328	anti-parallel
Strand 4	G	225	233	anti-parallel
Strand 5	G	208	214	anti-parallel
Strand 6	G	192	193	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	181	first strand
Strand 2	G	184	185	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	332	333	first strand
Strand 2	G	385	387	anti-parallel
Strand 3	G	394	396	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	406	409	first strand
Strand 2	G	415	421	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	424	first strand
Strand 2	G	472	473	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	173	175	first strand
Strand 2	H	279	285	parallel
Strand 3	H	322	328	anti-parallel
Strand 4	H	225	233	anti-parallel
Strand 5	H	208	214	anti-parallel
Strand 6	H	192	193	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	180	181	first strand
Strand 2	H	184	185	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	332	333	first strand
Strand 2	H	385	387	anti-parallel
Strand 3	H	394	396	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	406	410	first strand
Strand 2	H	414	421	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	423	424	first strand
Strand 2	H	472	473	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	9	first strand
Strand 2	I	20	26	anti-parallel
Strand 3	I	79	85	anti-parallel
Strand 4	I	71	74	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	123	127	parallel
Strand 3	I	94	101	anti-parallel
Strand 4	I	35	41	anti-parallel
Strand 5	I	48	53	anti-parallel
Strand 6	I	60	62	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	123	127	parallel
Strand 3	I	94	101	anti-parallel
Strand 4	I	118	119	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	7	9	first strand
Strand 2	J	20	26	anti-parallel
Strand 3	J	79	86	anti-parallel
Strand 4	J	71	74	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	12	15	first strand
Strand 2	J	123	128	parallel
Strand 3	J	94	101	anti-parallel
Strand 4	J	35	41	anti-parallel
Strand 5	J	48	53	anti-parallel
Strand 6	J	60	62	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	12	15	first strand
Strand 2	J	123	128	parallel
Strand 3	J	94	101	anti-parallel
Strand 4	J	118	119	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	9	first strand
Strand 2	K	20	27	anti-parallel
Strand 3	K	80	85	anti-parallel
Strand 4	K	70	75	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	14	first strand
Strand 2	K	121	125	parallel
Strand 3	K	94	100	anti-parallel
Strand 4	K	36	41	anti-parallel
Strand 5	K	48	53	anti-parallel
Strand 6	K	60	62	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	14	first strand
Strand 2	K	121	125	parallel
Strand 3	K	94	100	anti-parallel
Strand 4	K	116	117	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	15	first strand
Strand 2	L	121	126	parallel
Strand 3	L	94	100	anti-parallel
Strand 4	L	36	41	anti-parallel
Strand 5	L	48	53	anti-parallel
Strand 6	L	60	62	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	15	first strand
Strand 2	L	121	126	parallel
Strand 3	L	94	100	anti-parallel
Strand 4	L	116	117	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	24	first strand
Strand 2	L	80	85	anti-parallel
Strand 3	L	70	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EMY