Analysis of interatomic Contacts of Structural Units in PDB entry:
9END


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9END entry

There are 2 chains in PDB entry 9END (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 314
B
 SER 2SER 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9END. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
35 37Right-handed 310
Helix 3
AA3
A
38 57Right-handed alpha
Helix 4
AA4
A
67 72Right-handed alpha
Helix 5
AA5
A
91 107Right-handed alpha
Helix 6
AA6
A
108 113Right-handed alpha
Helix 7
AA7
A
124 137Right-handed alpha
Helix 8
AA8
A
139 141Right-handed 310
Helix 9
AA9
A
148 164Right-handed alpha
Helix 10
AB1
A
166 168Right-handed 310
Helix 11
AB2
A
186 188Right-handed 310
Helix 12
AB3
A
197 199Right-handed 310
Helix 13
AB4
A
201 205Right-handed 310
Helix 14
AB5
A
206 225Right-handed alpha
Helix 15
AB6
A
229 245Right-handed alpha
Helix 16
AB7
A
289 314Right-handed alpha
Helix 17
AB8
B
11 23Right-handed alpha
Helix 18
AB9
B
35 37Right-handed 310
Helix 19
AC1
B
38 56Right-handed alpha
Helix 20
AC2
B
67 71Right-handed 310
Helix 21
AC3
B
91 107Right-handed alpha
Helix 22
AC4
B
108 113Right-handed alpha
Helix 23
AC5
B
124 137Right-handed alpha
Helix 24
AC6
B
139 141Right-handed 310
Helix 25
AC7
B
147 163Right-handed alpha
Helix 26
AC8
B
166 168Right-handed 310
Helix 27
AC9
B
186 188Right-handed 310
Helix 28
AD1
B
207 225Right-handed alpha
Helix 29
AD2
B
230 245Right-handed alpha
Helix 30
AD3
B
289 315Right-handed alpha
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There are 8 sheets in PDB entry 9END. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
29 33parallel
Strand 3
A
3 7parallel
Strand 4
A
76 79parallel
Strand 5
A
117 120parallel
Strand 6
A
143 145parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
190 191anti-parallel
Strand 3
A
194 195anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
183 184anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 258first strand
Strand 2
A
265 276anti-parallel
Strand 3
A
279 283anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
29 33parallel
Strand 3
B
3 7parallel
Strand 4
B
76 79parallel
Strand 5
B
117 120parallel
Strand 6
B
143 145parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
190 191anti-parallel
Strand 3
B
194 195anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
183 184anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 258first strand
Strand 2
B
265 276anti-parallel
Strand 3
B
279 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il