Analysis of interatomic Contacts of Structural Units in PDB entry:
9EOC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EOC entry

There are 3 chains in PDB entry 9EOC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 564
B	PRO 2	HIS 507
D	MET 1	THR 710

There are 66 helices in PDB entry 9EOC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	7	Right-handed 310
Helix 2	AA2	A	17	22	Right-handed 310
Helix 3	AA3	A	50	70	Right-handed alpha
Helix 4	AA4	A	97	109	Right-handed alpha
Helix 5	AA5	A	122	134	Right-handed alpha
Helix 6	AA6	A	137	147	Right-handed alpha
Helix 7	AA7	A	168	193	Right-handed alpha
Helix 8	AA8	A	240	255	Right-handed alpha
Helix 9	AA9	A	288	291	Right-handed 310
Helix 10	AB1	A	344	356	Right-handed alpha
Helix 11	AB2	A	414	425	Right-handed alpha
Helix 12	AB3	A	443	456	Right-handed alpha
Helix 13	AB4	A	462	466	Right-handed 310
Helix 14	AB5	A	467	473	Right-handed 310
Helix 15	AB6	A	474	482	Right-handed alpha
Helix 16	AB7	A	487	508	Right-handed alpha
Helix 17	AB8	A	524	542	Right-handed alpha
Helix 18	AB9	A	548	561	Right-handed alpha
Helix 19	AC1	B	10	14	Right-handed 310
Helix 20	AC2	B	27	45	Right-handed alpha
Helix 21	AC3	B	69	78	Right-handed alpha
Helix 22	AC4	B	88	103	Right-handed alpha
Helix 23	AC5	B	125	133	Right-handed alpha
Helix 24	AC6	B	160	167	Right-handed alpha
Helix 25	AC7	B	169	178	Right-handed alpha
Helix 26	AC8	B	193	209	Right-handed alpha
Helix 27	AC9	B	259	263	Right-handed alpha
Helix 28	AD1	B	308	321	Right-handed alpha
Helix 29	AD2	B	373	375	Right-handed 310
Helix 30	AD3	B	408	425	Right-handed alpha
Helix 31	AD4	B	430	448	Right-handed alpha
Helix 32	AD5	B	449	466	Right-handed alpha
Helix 33	AD6	B	472	490	Right-handed alpha
Helix 34	AD7	D	2	18	Right-handed alpha
Helix 35	AD8	D	21	36	Right-handed alpha
Helix 36	AD9	D	39	53	Right-handed alpha
Helix 37	AE1	D	55	70	Right-handed alpha
Helix 38	AE2	D	73	88	Right-handed alpha
Helix 39	AE3	D	95	106	Right-handed alpha
Helix 40	AE4	D	107	122	Right-handed alpha
Helix 41	AE5	D	124	139	Right-handed alpha
Helix 42	AE6	D	140	145	Right-handed 310
Helix 43	AE7	D	146	162	Right-handed alpha
Helix 44	AE8	D	168	177	Right-handed alpha
Helix 45	AE9	D	177	185	Right-handed alpha
Helix 46	AF1	D	191	212	Right-handed alpha
Helix 47	AF2	D	254	270	Right-handed alpha
Helix 48	AF3	D	282	296	Right-handed alpha
Helix 49	AF4	D	303	329	Right-handed alpha
Helix 50	AF5	D	405	426	Right-handed alpha
Helix 51	AF6	D	426	440	Right-handed alpha
Helix 52	AF7	D	446	460	Right-handed alpha
Helix 53	AF8	D	462	476	Right-handed alpha
Helix 54	AF9	D	494	506	Right-handed alpha
Helix 55	AG1	D	510	520	Right-handed alpha
Helix 56	AG2	D	521	523	Right-handed 310
Helix 57	AG3	D	556	577	Right-handed alpha
Helix 58	AG4	D	583	592	Right-handed alpha
Helix 59	AG5	D	593	595	Right-handed 310
Helix 60	AG6	D	600	615	Right-handed alpha
Helix 61	AG7	D	621	626	Right-handed alpha
Helix 62	AG8	D	628	638	Right-handed alpha
Helix 63	AG9	D	673	683	Right-handed alpha
Helix 64	AH1	D	684	686	Right-handed 310
Helix 65	AH2	D	689	701	Right-handed alpha
Helix 66	AH3	D	703	709	Right-handed alpha

There are 9 sheets in PDB entry 9EOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	75	81	anti-parallel
Strand 3	A	9	15	parallel
Strand 4	A	158	163	parallel
Strand 5	A	202	205	parallel
Strand 6	A	230	234	parallel
Strand 7	A	221	224	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	236	238	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	286	first strand
Strand 2	A	257	262	anti-parallel
Strand 3	A	313	314	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	360	364	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	384	389	anti-parallel
Strand 5	A	331	336	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	B	369	371	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	67	first strand
Strand 2	B	51	56	anti-parallel
Strand 3	B	3	8	parallel
Strand 4	B	109	114	parallel
Strand 5	B	150	156	parallel
Strand 6	B	183	187	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	25	26	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	218	first strand
Strand 2	B	221	228	anti-parallel
Strand 3	B	269	275	anti-parallel
Strand 4	B	348	352	anti-parallel
Strand 5	B	332	338	anti-parallel
Strand 6	B	322	329	anti-parallel
Strand 7	B	250	258	anti-parallel
Strand 8	B	212	218	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	350	first strand
Strand 2	D	549	554	anti-parallel
Strand 3	D	396	397	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EOC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EOC