Analysis of interatomic Contacts of Structural Units in PDB entry:
9EOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EOF entry

There are 4 chains in PDB entry 9EOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1GLY 391
D
 MET 1THR 710
F
 THR 22PHE 995
G
 ALA 28PRO 1009
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are150 helices in PDB entry 9EOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
1 10Right-handed alpha
Helix 2
AA2
C
12 35Right-handed alpha
Helix 3
AA3
C
41 52Right-handed alpha
Helix 4
AA4
C
68 85Right-handed alpha
Helix 5
AA5
C
87 100Right-handed alpha
Helix 6
AA6
C
105 124Right-handed alpha
Helix 7
AA7
C
126 139Right-handed alpha
Helix 8
AA8
C
141 158Right-handed alpha
Helix 9
AA9
C
163 169Right-handed alpha
Helix 10
AB1
C
169 174Right-handed alpha
Helix 11
AB2
C
174 189Right-handed alpha
Helix 12
AB3
C
199 213Right-handed alpha
Helix 13
AB4
C
214 217Right-handed 310
Helix 14
AB5
C
218 224Right-handed alpha
Helix 15
AB6
C
239 258Right-handed alpha
Helix 16
AB7
C
277 308Right-handed alpha
Helix 17
AB8
C
318 336Right-handed alpha
Helix 18
AB9
C
341 362Right-handed alpha
Helix 19
AC1
C
368 376Right-handed alpha
Helix 20
AC2
C
382 391Right-handed alpha
Helix 21
AC3
D
2 17Right-handed alpha
Helix 22
AC4
D
21 36Right-handed alpha
Helix 23
AC5
D
39 53Right-handed alpha
Helix 24
AC6
D
55 70Right-handed alpha
Helix 25
AC7
D
73 88Right-handed alpha
Helix 26
AC8
D
95 106Right-handed alpha
Helix 27
AC9
D
107 121Right-handed alpha
Helix 28
AD1
D
124 139Right-handed alpha
Helix 29
AD2
D
142 162Right-handed alpha
Helix 30
AD3
D
168 177Right-handed alpha
Helix 31
AD4
D
177 185Right-handed alpha
Helix 32
AD5
D
193 211Right-handed alpha
Helix 33
AD6
D
254 271Right-handed alpha
Helix 34
AD7
D
282 298Right-handed alpha
Helix 35
AD8
D
303 329Right-handed alpha
Helix 36
AD9
D
330 334Right-handed 310
Helix 37
AE1
D
405 426Right-handed alpha
Helix 38
AE2
D
426 440Right-handed alpha
Helix 39
AE3
D
446 460Right-handed alpha
Helix 40
AE4
D
462 476Right-handed alpha
Helix 41
AE5
D
490 505Right-handed alpha
Helix 42
AE6
D
510 521Right-handed alpha
Helix 43
AE7
D
556 577Right-handed alpha
Helix 44
AE8
D
582 594Right-handed alpha
Helix 45
AE9
D
600 615Right-handed alpha
Helix 46
AF1
D
621 625Right-handed 310
Helix 47
AF2
D
628 639Right-handed alpha
Helix 48
AF3
D
673 684Right-handed alpha
Helix 49
AF4
D
689 701Right-handed alpha
Helix 50
AF5
D
703 709Right-handed alpha
Helix 51
AF6
F
23 30Right-handed alpha
Helix 52
AF7
F
32 37Right-handed alpha
Helix 53
AF8
F
48 59Right-handed alpha
Helix 54
AF9
F
76 91Right-handed alpha
Helix 55
AG1
F
95 103Right-handed alpha
Helix 56
AG2
F
104 120Right-handed alpha
Helix 57
AG3
F
127 131Right-handed alpha
Helix 58
AG4
F
136 158Right-handed alpha
Helix 59
AG5
F
177 194Right-handed alpha
Helix 60
AG6
F
194 208Right-handed alpha
Helix 61
AG7
F
244 264Right-handed alpha
Helix 62
AG8
F
265 266Right-handed 310
Helix 63
AG9
F
267 268Right-handed 310
Helix 64
AH1
F
269 289Right-handed alpha
Helix 65
AH2
F
298 313Right-handed alpha
Helix 66
AH3
F
324 336Right-handed alpha
Helix 67
AH4
F
337 352Right-handed alpha
Helix 68
AH5
F
355 373Right-handed alpha
Helix 69
AH6
F
376 395Right-handed alpha
Helix 70
AH7
F
400 407Right-handed alpha
Helix 71
AH8
F
411 425Right-handed alpha
Helix 72
AH9
F
431 449Right-handed alpha
Helix 73
AI1
F
452 461Right-handed alpha
Helix 74
AI2
F
462 469Right-handed alpha
Helix 75
AI3
F
472 483Right-handed alpha
Helix 76
AI4
F
504 519Right-handed alpha
Helix 77
AI5
F
521 536Right-handed alpha
Helix 78
AI6
F
551 559Right-handed alpha
Helix 79
AI7
F
563 583Right-handed alpha
Helix 80
AI8
F
585 600Right-handed alpha
Helix 81
AI9
F
604 626Right-handed alpha
Helix 82
AJ1
F
636 647Right-handed alpha
Helix 83
AJ2
F
656 670Right-handed alpha
Helix 84
AJ3
F
672 678Right-handed alpha
Helix 85
AJ4
F
681 688Right-handed alpha
Helix 86
AJ5
F
688 703Right-handed alpha
Helix 87
AJ6
F
710 725Right-handed alpha
Helix 88
AJ7
F
740 745Right-handed alpha
Helix 89
AJ8
F
753 763Right-handed alpha
Helix 90
AJ9
F
766 782Right-handed alpha
Helix 91
AK1
F
810 829Right-handed alpha
Helix 92
AK2
F
832 846Right-handed alpha
Helix 93
AK3
F
848 864Right-handed alpha
Helix 94
AK4
F
877 891Right-handed alpha
Helix 95
AK5
F
893 902Right-handed alpha
Helix 96
AK6
F
908 918Right-handed alpha
Helix 97
AK7
F
925 932Right-handed 310
Helix 98
AK8
F
934 948Right-handed alpha
Helix 99
AK9
F
950 962Right-handed alpha
Helix 100
AL1
F
973 995Right-handed alpha
Helix 101
AL2
G
29 40Right-handed alpha
Helix 102
AL3
G
53 66Right-handed alpha
Helix 103
AL4
G
69 94Right-handed alpha
Helix 104
AL5
G
118 136Right-handed alpha
Helix 105
AL6
G
136 158Right-handed alpha
Helix 106
AL7
G
174 182Right-handed alpha
Helix 107
AL8
G
183 201Right-handed alpha
Helix 108
AL9
G
205 220Right-handed alpha
Helix 109
AM1
G
223 234Right-handed alpha
Helix 110
AM2
G
234 253Right-handed alpha
Helix 111
AM3
G
291 321Right-handed alpha
Helix 112
AM4
G
336 348Right-handed alpha
Helix 113
AM5
G
348 357Right-handed alpha
Helix 114
AM6
G
358 364Right-handed alpha
Helix 115
AM7
G
365 378Right-handed alpha
Helix 116
AM8
G
380 397Right-handed alpha
Helix 117
AM9
G
402 413Right-handed alpha
Helix 118
AN1
G
429 451Right-handed alpha
Helix 119
AN2
G
471 478Right-handed alpha
Helix 120
AN3
G
480 490Right-handed alpha
Helix 121
AN4
G
494 510Right-handed alpha
Helix 122
AN5
G
513 526Right-handed alpha
Helix 123
AN6
G
528 544Right-handed alpha
Helix 124
AN7
G
548 563Right-handed alpha
Helix 125
AN8
G
567 587Right-handed alpha
Helix 126
AN9
G
589 596Right-handed alpha
Helix 127
AO1
G
598 605Right-handed alpha
Helix 128
AO2
G
606 615Right-handed alpha
Helix 129
AO3
G
618 632Right-handed alpha
Helix 130
AO4
G
640 662Right-handed alpha
Helix 131
AO5
G
663 666Right-handed 310
Helix 132
AO6
G
667 681Right-handed alpha
Helix 133
AO7
G
681 698Right-handed alpha
Helix 134
AO8
G
702 706Right-handed 310
Helix 135
AO9
G
768 788Right-handed alpha
Helix 136
AP1
G
805 821Right-handed alpha
Helix 137
AP2
G
833 839Right-handed 310
Helix 138
AP3
G
840 854Right-handed alpha
Helix 139
AP4
G
855 867Right-handed alpha
Helix 140
AP5
G
868 873Right-handed 310
Helix 141
AP6
G
874 892Right-handed alpha
Helix 142
AP7
G
900 917Right-handed alpha
Helix 143
AP8
G
921 926Right-handed alpha
Helix 144
AP9
G
927 932Right-handed 310
Helix 145
AQ1
G
935 953Right-handed alpha
Helix 146
AQ2
G
956 958Right-handed 310
Helix 147
AQ3
G
972 977Right-handed alpha
Helix 148
AQ4
G
983 995Right-handed alpha
Helix 149
AQ5
G
995 1000Right-handed alpha
Helix 150
AQ6
G
1001 1006Right-handed 310
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There are 3 sheets in PDB entry 9EOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
345 349first strand
Strand 2
D
550 554anti-parallel
Strand 3
D
396 397parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
617 618first strand
Strand 2
D
648 649parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
960 963first strand
Strand 2
G
968 971anti-parallel
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