Analysis of interatomic Contacts of Structural Units in PDB entry:
9EPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EPO entry

There are 2 chains in PDB entry 9EPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 206ARG 563
D
 PHE 206ARG 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 9EPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
211 215Right-handed 310
Helix 2
AA2
A
217 221Right-handed 310
Helix 3
AA3
A
246 277Right-handed alpha
Helix 4
AA4
A
286 310Right-handed alpha
Helix 5
AA5
A
333 366Right-handed alpha
Helix 6
AA6
A
370 376Right-handed alpha
Helix 7
AA7
A
377 399Right-handed alpha
Helix 8
AA8
A
417 425Right-handed alpha
Helix 9
AA9
A
425 451Right-handed alpha
Helix 10
AB1
A
465 508Right-handed alpha
Helix 11
AB2
A
526 543Right-handed alpha
Helix 12
AB3
A
543 549Right-handed alpha
Helix 13
AB4
A
550 563Right-handed alpha
Helix 14
AB5
D
211 215Right-handed 310
Helix 15
AB6
D
217 221Right-handed 310
Helix 16
AB7
D
246 277Right-handed alpha
Helix 17
AB8
D
286 310Right-handed alpha
Helix 18
AB9
D
333 366Right-handed alpha
Helix 19
AC1
D
370 376Right-handed alpha
Helix 20
AC2
D
377 399Right-handed alpha
Helix 21
AC3
D
417 425Right-handed alpha
Helix 22
AC4
D
425 451Right-handed alpha
Helix 23
AC5
D
465 508Right-handed alpha
Helix 24
AC6
D
526 543Right-handed alpha
Helix 25
AC7
D
543 549Right-handed alpha
Helix 26
AC8
D
550 563Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9EPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
227 228anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
326 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
411 413anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
223 224first strand
Strand 2
D
227 228anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
315 316first strand
Strand 2
D
326 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
402 404first strand
Strand 2
D
411 413anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il