Analysis of interatomic Contacts of Structural Units in PDB entry:
9EQ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EQ5 entry

There are 8 chains in PDB entry 9EQ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 11	GLY 152
A	ASP 156	PHE 548
B	ASN 11	GLY 152
B	ASP 156	PHE 548
C	ASN 11	GLY 152
C	ASP 156	PHE 548
D	ASN 11	GLY 152
D	ASP 156	PHE 548

There are108 helices in PDB entry 9EQ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	29	Right-handed alpha
Helix 2	AA2	A	39	59	Right-handed alpha
Helix 3	AA3	A	79	81	Right-handed 310
Helix 4	AA4	A	82	94	Right-handed alpha
Helix 5	AA5	A	103	119	Right-handed alpha
Helix 6	AA6	A	126	139	Right-handed alpha
Helix 7	AA7	A	157	169	Right-handed alpha
Helix 8	AA8	A	185	192	Right-handed alpha
Helix 9	AA9	A	202	209	Right-handed alpha
Helix 10	AB1	A	211	243	Right-handed alpha
Helix 11	AB2	A	246	250	Right-handed 310
Helix 12	AB3	A	251	257	Right-handed alpha
Helix 13	AB4	A	260	274	Right-handed alpha
Helix 14	AB5	A	291	296	Right-handed alpha
Helix 15	AB6	A	296	320	Right-handed alpha
Helix 16	AB7	A	343	373	Right-handed alpha
Helix 17	AB8	A	373	378	Right-handed alpha
Helix 18	AB9	A	381	385	Right-handed 310
Helix 19	AC1	A	396	414	Right-handed alpha
Helix 20	AC2	A	417	421	Right-handed 310
Helix 21	AC3	A	435	472	Right-handed alpha
Helix 22	AC4	A	478	482	Right-handed 310
Helix 23	AC5	A	483	497	Right-handed alpha
Helix 24	AC6	A	510	514	Right-handed 310
Helix 25	AC7	A	515	529	Right-handed alpha
Helix 26	AC8	A	531	537	Right-handed alpha
Helix 27	AC9	A	537	548	Right-handed alpha
Helix 28	AD1	B	20	29	Right-handed alpha
Helix 29	AD2	B	39	59	Right-handed alpha
Helix 30	AD3	B	79	81	Right-handed 310
Helix 31	AD4	B	82	94	Right-handed alpha
Helix 32	AD5	B	103	119	Right-handed alpha
Helix 33	AD6	B	126	139	Right-handed alpha
Helix 34	AD7	B	157	169	Right-handed alpha
Helix 35	AD8	B	185	192	Right-handed alpha
Helix 36	AD9	B	202	209	Right-handed alpha
Helix 37	AE1	B	211	243	Right-handed alpha
Helix 38	AE2	B	246	250	Right-handed 310
Helix 39	AE3	B	251	257	Right-handed alpha
Helix 40	AE4	B	260	274	Right-handed alpha
Helix 41	AE5	B	291	296	Right-handed alpha
Helix 42	AE6	B	296	320	Right-handed alpha
Helix 43	AE7	B	343	373	Right-handed alpha
Helix 44	AE8	B	373	378	Right-handed alpha
Helix 45	AE9	B	381	385	Right-handed 310
Helix 46	AF1	B	396	414	Right-handed alpha
Helix 47	AF2	B	417	421	Right-handed 310
Helix 48	AF3	B	435	472	Right-handed alpha
Helix 49	AF4	B	478	482	Right-handed 310
Helix 50	AF5	B	483	497	Right-handed alpha
Helix 51	AF6	B	510	514	Right-handed 310
Helix 52	AF7	B	515	529	Right-handed alpha
Helix 53	AF8	B	531	537	Right-handed alpha
Helix 54	AF9	B	537	548	Right-handed alpha
Helix 55	AG1	C	20	29	Right-handed alpha
Helix 56	AG2	C	39	59	Right-handed alpha
Helix 57	AG3	C	79	81	Right-handed 310
Helix 58	AG4	C	82	94	Right-handed alpha
Helix 59	AG5	C	103	119	Right-handed alpha
Helix 60	AG6	C	126	139	Right-handed alpha
Helix 61	AG7	C	157	169	Right-handed alpha
Helix 62	AG8	C	185	192	Right-handed alpha
Helix 63	AG9	C	202	209	Right-handed alpha
Helix 64	AH1	C	211	243	Right-handed alpha
Helix 65	AH2	C	246	250	Right-handed 310
Helix 66	AH3	C	251	257	Right-handed alpha
Helix 67	AH4	C	260	274	Right-handed alpha
Helix 68	AH5	C	291	296	Right-handed alpha
Helix 69	AH6	C	296	320	Right-handed alpha
Helix 70	AH7	C	343	373	Right-handed alpha
Helix 71	AH8	C	373	378	Right-handed alpha
Helix 72	AH9	C	381	385	Right-handed 310
Helix 73	AI1	C	396	414	Right-handed alpha
Helix 74	AI2	C	417	421	Right-handed 310
Helix 75	AI3	C	435	472	Right-handed alpha
Helix 76	AI4	C	478	482	Right-handed 310
Helix 77	AI5	C	483	497	Right-handed alpha
Helix 78	AI6	C	510	514	Right-handed 310
Helix 79	AI7	C	515	529	Right-handed alpha
Helix 80	AI8	C	531	537	Right-handed alpha
Helix 81	AI9	C	537	548	Right-handed alpha
Helix 82	AJ1	D	20	29	Right-handed alpha
Helix 83	AJ2	D	39	59	Right-handed alpha
Helix 84	AJ3	D	79	81	Right-handed 310
Helix 85	AJ4	D	82	94	Right-handed alpha
Helix 86	AJ5	D	103	119	Right-handed alpha
Helix 87	AJ6	D	126	139	Right-handed alpha
Helix 88	AJ7	D	157	169	Right-handed alpha
Helix 89	AJ8	D	185	192	Right-handed alpha
Helix 90	AJ9	D	202	209	Right-handed alpha
Helix 91	AK1	D	211	243	Right-handed alpha
Helix 92	AK2	D	246	250	Right-handed 310
Helix 93	AK3	D	251	257	Right-handed alpha
Helix 94	AK4	D	260	274	Right-handed alpha
Helix 95	AK5	D	291	296	Right-handed alpha
Helix 96	AK6	D	296	320	Right-handed alpha
Helix 97	AK7	D	343	373	Right-handed alpha
Helix 98	AK8	D	373	378	Right-handed alpha
Helix 99	AK9	D	381	385	Right-handed 310
Helix 100	AL1	D	396	414	Right-handed alpha
Helix 101	AL2	D	417	421	Right-handed 310
Helix 102	AL3	D	435	472	Right-handed alpha
Helix 103	AL4	D	478	482	Right-handed 310
Helix 104	AL5	D	483	497	Right-handed alpha
Helix 105	AL6	D	510	514	Right-handed 310
Helix 106	AL7	D	515	529	Right-handed alpha
Helix 107	AL8	D	531	537	Right-handed alpha
Helix 108	AL9	D	537	548	Right-handed alpha

There are 16 sheets in PDB entry 9EQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	35	36	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	146	148	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	175	178	anti-parallel
Strand 3	A	181	184	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	334	336	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	35	36	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	146	148	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	143	first strand
Strand 2	B	175	178	anti-parallel
Strand 3	B	181	184	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	334	336	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	35	36	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	146	148	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	175	178	anti-parallel
Strand 3	C	181	184	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	334	336	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	35	36	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	146	148	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	175	178	anti-parallel
Strand 3	D	181	184	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	334	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EQ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EQ5