Analysis of interatomic Contacts of Structural Units in PDB entry:
9EQ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EQ6 entry

There are 2 chains in PDB entry 9EQ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 32	SER 153
A	PHE 53	ASP 1090

There are 42 helices in PDB entry 9EQ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	38	42	Right-handed 310
Helix 2	AA2	B	59	68	Right-handed alpha
Helix 3	AA3	B	70	76	Right-handed alpha
Helix 4	AA4	B	81	91	Right-handed alpha
Helix 5	AA5	B	105	124	Right-handed alpha
Helix 6	AA6	B	128	136	Right-handed 310
Helix 7	AA7	A	55	71	Right-handed alpha
Helix 8	AA8	A	75	86	Right-handed alpha
Helix 9	AA9	A	95	132	Right-handed alpha
Helix 10	AB1	A	180	195	Right-handed alpha
Helix 11	AB2	A	225	228	Right-handed 310
Helix 12	AB3	A	229	237	Right-handed alpha
Helix 13	AB4	A	254	270	Right-handed alpha
Helix 14	AB5	A	294	298	Right-handed 310
Helix 15	AB6	A	304	317	Right-handed alpha
Helix 16	AB7	A	326	340	Right-handed alpha
Helix 17	AB8	A	364	366	Right-handed 310
Helix 18	AB9	A	367	386	Right-handed alpha
Helix 19	AC1	A	407	416	Right-handed alpha
Helix 20	AC2	A	419	423	Right-handed 310
Helix 21	AC3	A	449	457	Right-handed 310
Helix 22	AC4	A	503	507	Right-handed alpha
Helix 23	AC5	A	507	512	Right-handed alpha
Helix 24	AC6	A	538	542	Right-handed 310
Helix 25	AC7	A	550	555	Right-handed alpha
Helix 26	AC8	A	559	570	Right-handed alpha
Helix 27	AC9	A	585	590	Right-handed alpha
Helix 28	AD1	A	645	650	Right-handed alpha
Helix 29	AD2	A	678	685	Right-handed alpha
Helix 30	AD3	A	688	700	Right-handed alpha
Helix 31	AD4	A	714	722	Right-handed alpha
Helix 32	AD5	A	724	736	Right-handed alpha
Helix 33	AD6	A	767	770	Right-handed 310
Helix 34	AD7	A	771	780	Right-handed alpha
Helix 35	AD8	A	814	816	Right-handed 310
Helix 36	AD9	A	829	839	Right-handed alpha
Helix 37	AE1	A	840	844	Right-handed 310
Helix 38	AE2	A	880	885	Right-handed alpha
Helix 39	AE3	A	885	893	Right-handed alpha
Helix 40	AE4	A	1037	1041	Right-handed 310
Helix 41	AE5	A	1043	1048	Right-handed alpha
Helix 42	AE6	A	1077	1081	Right-handed 310

There are 11 sheets in PDB entry 9EQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	48	49	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	627	630	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	210	212	anti-parallel
Strand 3	A	198	205	anti-parallel
Strand 4	A	492	502	anti-parallel
Strand 5	A	479	489	anti-parallel
Strand 6	A	466	467	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	210	212	anti-parallel
Strand 3	A	198	205	anti-parallel
Strand 4	A	492	502	anti-parallel
Strand 5	A	479	489	anti-parallel
Strand 6	A	471	472	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	277	281	anti-parallel
Strand 3	A	240	247	parallel
Strand 4	A	351	359	parallel
Strand 5	A	390	397	parallel
Strand 6	A	436	440	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	532	first strand
Strand 2	A	519	525	anti-parallel
Strand 3	A	614	621	anti-parallel
Strand 4	A	599	608	anti-parallel
Strand 5	A	572	580	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	656	first strand
Strand 2	A	661	663	anti-parallel
Strand 3	A	759	760	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	671	first strand
Strand 2	A	753	757	anti-parallel
Strand 3	A	742	748	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	798	807	anti-parallel
Strand 6	A	785	791	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	863	first strand
Strand 2	A	850	856	anti-parallel
Strand 3	A	948	955	anti-parallel
Strand 4	A	936	942	anti-parallel
Strand 5	A	926	927	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	901	906	first strand
Strand 2	A	911	916	anti-parallel
Strand 3	A	987	990	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1053	1058	first strand
Strand 2	A	1065	1073	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EQ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EQ6