Analysis of interatomic Contacts of Structural Units in PDB entry:
9ERV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ERV entry

There are 2 chains in PDB entry 9ERV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13THR 372
B
 GLU 15GLY 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9ERV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
32 50Right-handed alpha
Helix 3
AA3
A
50 69Right-handed alpha
Helix 4
AA4
A
82 91Right-handed alpha
Helix 5
AA5
A
105 109Right-handed 310
Helix 6
AA6
A
121 135Right-handed alpha
Helix 7
AA7
A
186 202Right-handed alpha
Helix 8
AA8
A
213 231Right-handed alpha
Helix 9
AA9
A
237 256Right-handed alpha
Helix 10
AB1
A
256 272Right-handed alpha
Helix 11
AB2
A
273 280Right-handed alpha
Helix 12
AB3
A
314 316Right-handed 310
Helix 13
AB4
A
317 331Right-handed alpha
Helix 14
AB5
A
342 352Right-handed alpha
Helix 15
AB6
A
354 371Right-handed alpha
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There are 2 sheets in PDB entry 9ERV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
113 119anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
157 164anti-parallel
Strand 5
A
140 147anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
A
334 341anti-parallel
Strand 3
A
287 294anti-parallel
Strand 4
A
305 313anti-parallel
Strand 5
B
52 56anti-parallel
Strand 6
B
41 49anti-parallel
Strand 7
B
35 38anti-parallel
Strand 8
B
27 30anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il