Analysis of interatomic Contacts of Structural Units in PDB entry:
9ETJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ETJ entry

There are 4 chains in PDB entry 9ETJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 161	GLY 378
C	VAL 2	SER 128
B	LYS 162	GLY 378
D	VAL 2	TRP 109

There are 44 helices in PDB entry 9ETJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	161	165	Right-handed 310
Helix 2	AA2	A	174	194	Right-handed alpha
Helix 3	AA3	A	195	200	Right-handed alpha
Helix 4	AA4	A	217	221	Right-handed alpha
Helix 5	AA5	A	243	249	Right-handed alpha
Helix 6	AA6	A	250	257	Right-handed alpha
Helix 7	AA7	A	282	287	Right-handed alpha
Helix 8	AA8	A	321	335	Right-handed alpha
Helix 9	AA9	C	62	65	Right-handed 310
Helix 10	AB1	C	84	88	Right-handed 310
Helix 11	AB2	C	100	106	Right-handed 310
Helix 12	AB3	B	174	194	Right-handed alpha
Helix 13	AB4	B	195	201	Right-handed alpha
Helix 14	AB5	B	216	221	Right-handed alpha
Helix 15	AB6	B	237	240	Right-handed 310
Helix 16	AB7	B	243	249	Right-handed alpha
Helix 17	AB8	B	250	257	Right-handed alpha
Helix 18	AB9	B	284	289	Right-handed 310
Helix 19	AC1	B	321	337	Right-handed alpha
Helix 20	AC2	D	74	76	Right-handed 310
Helix 21	AC3	D	84	88	Right-handed 310
Helix 22	AC4	D	100	105	Right-handed alpha
Helix 23	AC5	E	161	165	Right-handed 310
Helix 24	AC6	E	174	195	Right-handed alpha
Helix 25	AC7	E	195	201	Right-handed alpha
Helix 26	AC8	E	216	221	Right-handed alpha
Helix 27	AC9	E	237	240	Right-handed 310
Helix 28	AD1	E	243	249	Right-handed alpha
Helix 29	AD2	E	250	257	Right-handed alpha
Helix 30	AD3	E	284	289	Right-handed 310
Helix 31	AD4	E	321	337	Right-handed alpha
Helix 32	AD5	F	62	65	Right-handed 310
Helix 33	AD6	F	84	88	Right-handed 310
Helix 34	AD7	F	101	105	Right-handed 310
Helix 35	AD8	G	174	195	Right-handed alpha
Helix 36	AD9	G	195	201	Right-handed alpha
Helix 37	AE1	G	216	221	Right-handed alpha
Helix 38	AE2	G	237	240	Right-handed 310
Helix 39	AE3	G	243	249	Right-handed alpha
Helix 40	AE4	G	250	256	Right-handed alpha
Helix 41	AE5	G	282	287	Right-handed alpha
Helix 42	AE6	G	321	337	Right-handed alpha
Helix 43	AE7	H	84	88	Right-handed 310
Helix 44	AE8	H	100	105	Right-handed 310

There are 20 sheets in PDB entry 9ETJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	359	376	anti-parallel
Strand 4	A	260	270	anti-parallel
Strand 5	A	274	280	anti-parallel
Strand 6	A	309	314	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	359	376	anti-parallel
Strand 4	A	349	353	anti-parallel
Strand 5	A	344	345	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	122	126	parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	122	126	parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	117	118	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	235	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	359	376	anti-parallel
Strand 4	B	260	270	anti-parallel
Strand 5	B	274	280	anti-parallel
Strand 6	B	309	314	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	235	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	359	376	anti-parallel
Strand 4	B	349	353	anti-parallel
Strand 5	B	342	346	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	122	126	parallel
Strand 3	D	89	96	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	122	126	parallel
Strand 3	D	89	96	anti-parallel
Strand 4	D	117	118	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	235	first strand
Strand 2	E	168	173	anti-parallel
Strand 3	E	359	376	anti-parallel
Strand 4	E	260	270	anti-parallel
Strand 5	E	274	280	anti-parallel
Strand 6	E	309	314	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	235	first strand
Strand 2	E	168	173	anti-parallel
Strand 3	E	359	376	anti-parallel
Strand 4	E	349	353	anti-parallel
Strand 5	E	344	345	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	117	118	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	230	235	first strand
Strand 2	G	168	173	anti-parallel
Strand 3	G	358	376	anti-parallel
Strand 4	G	260	270	anti-parallel
Strand 5	G	274	280	anti-parallel
Strand 6	G	309	314	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	230	235	first strand
Strand 2	G	168	173	anti-parallel
Strand 3	G	358	376	anti-parallel
Strand 4	G	350	355	anti-parallel
Strand 5	G	342	345	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	72	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	89	96	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	89	96	anti-parallel
Strand 4	H	117	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ETJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ETJ